Published September 5, 2024
| Version v1
Journal article
Open
Unveiling the solution structure of a DNA duplex with continuous silver-modified Watson-Crick base pairs
Creators
- 1. National Institute of Chemistry
- 2. Universidad de Granada
- 3. Oregon State University
- 4. Universitat Autònoma de Barcelona
- 5. University of Chicago
Description
The challenge of transforming organized DNA structures into their metallized counterparts persists in the scientific field. In this context, utilizing DNA molecules modified with 7-deazapurine, provides a transformative solution. In this study, we present the solution structure of a DNA duplex that can be transformed into its metallized equivalent while retaining the natural base pairing arrangement through the creation of silver-modified Watson-Crick base pairs. Unlike previously documented X-ray structures, our research demonstrates the feasibility of preserving the intrinsic DNA self-assembly while incorporating AgI into the double helix, illustrating that the binding of silver does not disrupt the canonical base-pairing organization. Moreover, in our case, the uninterrupted AgI chain deviates from forming conventional straight linear chains; instead, it adheres to a helical arrangement dictated by the underlying DNA structure. This research challenges conventional assumptions and opens the door to precisely design structures based on the organization of highly stable Ag-DNA assemblies.
Data availability
Structure coordinates are deposited at the Protein Data Bank under accession code 9GDM (https://www.wwpdb.org/), and data derived from NMR spectroscopy at the BioMagResBankn under accession code 34942 (https://bmrb.io/). The coordinates of the DFT-optimized structure generated in this study are provided in the Source Data file with this paper. All data were available from the corresponding authors upon request. Source data are provided with this paper.Files
Unveiling-the-solution-structure-of-a-DNA-duplex-with-continuous-silver-modified-Watson-Crick-base-pairs.pdf
Additional details
Identifiers
- DOI
- 10.1038/s41467-024-51876-8
- Other
- oai:uchicago.tind.io:13553
Funding
- Spanish MINECO
- PID2020-120186RB-I00
- Spanish MICIU
- Salvador Madariaga Program
- Junta de Andalucia
- P20_00702
- Slovenian Research Agency
- P1-0242
- Slovenian Research Agency
- J1-1704
- Spanish Ministerio de Ciencia e Innovación
- PID2022-138479NB-I00
- CERIC-ERIC Consortium
- 20172040
- CERIC-ERIC Consortium
- 20222132