Published September 6, 2018 | Version v1
Journal article Open

Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal

  • 1. University of Chicago
  • 2. Patan Hospital
  • 3. Mountain Medicine Society of Nepal
  • 4. Case Western Reserve University
  • 5. Washington University in St. Louis
  • 6. Dartmouth College

Description

Adaptive evolution in humans has rarely been characterized for its whole set of components, i.e. selective pressure, adaptive phenotype, beneficial alleles and realized fitness differential. We combined approaches for detecting polygenic adaptations and for mapping the genetic bases of physiological and fertility phenotypes in approximately 1000 indigenous ethnically Tibetan women from Nepal, adapted to high altitude. The results of genome-wide association analyses and tests for polygenic adaptations showed evidence of positive selection for alleles associated with more pregnancies and live births and evidence of negative selection for those associated with higher offspring mortality. Lower hemoglobin level did not show clear evidence for polygenic adaptation, despite its strong association with an EPAS1 haplotype carrying selective sweep signals.

Data availability

Genotype data and GWAS summary statistics are available from dryad digital repository (https://doi.org/10.5061/dryad.bp46m). Phenotype data are available from dryad digital repository (https://doi.org/10.5061/dryad.gc2n2). Sequence data are deposited to SRA under the accession number PRJNA420511.

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Additional details

Identifiers

DOI
10.1371/journal.pgen.1007650
Other
oai:uchicago.tind.io:6360

Related works

Funding

National Science Foundation
1153911
Dartmouth
Rockefeller Center
Dartmouth
Claire Garber Goodman Fund
National Institutes of Health
1R01HL119577
National Science Foundation
1153911
Cancer Center
P30 CA014599

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Human Genetics