Published April 24, 2025 | Version v1
Journal article Open

Explainable differential diagnosis with dual-inference large language models

  • 1. University of Minnesota
  • 2. University of California, San Francisco
  • 3. University of Chicago
  • 4. Illinois Institute of Technology
  • 5. Stanford University

Description

Automatic differential diagnosis (DDx) involves identifying potential conditions that could explain a patient's symptoms and its accurate interpretation is of substantial significance. While large language models (LLMs) have demonstrated remarkable diagnostic accuracy, their capability to generate high-quality DDx explanations remains underexplored, largely due to the absence of specialized evaluation datasets and the inherent challenges of complex reasoning in LLMs. Therefore, building a tailored dataset and developing novel methods to elicit LLMs for generating precise DDx explanations are worth exploring. We developed the first publicly available DDx dataset, comprising expert-derived explanations for 570 clinical notes, to evaluate DDx explanations. Meanwhile, we proposed a novel framework, Dual-Inf, that could effectively harness LLMs to generate high-quality DDx explanations. To the best of our knowledge, it is the first study to tailor LLMs for DDx explanation and comprehensively evaluate their explainability. Overall, our study bridges a critical gap in DDx explanation, enhancing clinical decision-making.

Data availability

Data is provided in the supplementary information files.

The code used for this study is available at https://github.com/betterzhou/Dual-Inf.

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Additional details

Identifiers

DOI
10.1038/s44401-025-00015-6
Other
oai:uchicago.tind.io:14947

Funding

National Center for Complementary and Integrative Health
R01AT009457
National Institute on Aging
R01AG078154
National Cancer Institute
R01CA287413
Center for Learning Health System Sciences, University of Minnesota

UChicago Information

Division(s)
Physical Sciences Division
Department(s)
Computer Science