Published November 8, 2021 | Version v1
Journal article Open

The role of competition versus cooperation in microbial community coalescence

  • 1. University of Chicago
  • 2. Imperial College London

Description

New microbial communities often arise through the mixing of two or more separately assembled parent communities, a phenomenon that has been termed "community coalescence". Understanding how the interaction structures of complex parent communities determine the outcomes of coalescence events is an important challenge. While recent work has begun to elucidate the role of competition in coalescence, that of cooperation, a key interaction type commonly seen in microbial communities, is still largely unknown. Here, using a general consumer-resource model, we study the combined effects of competitive and cooperative interactions on the outcomes of coalescence events. To do so, we simulate coalescence events between pairs of communities with different degrees of competition for shared carbon resources and cooperation through cross-feeding on leaked metabolic by-products (facilitation). We also study how structural and functional properties of post-coalescence communities evolve when they are subjected to repeated coalescence events. We find that in coalescence events, the less competitive and more cooperative parent communities contribute a higher proportion of species to the new community because of their superior ability to deplete resources and resist invasions. Consequently, when a community is subjected to repeated coalescence events, it gradually evolves towards being less competitive and more cooperative, as well as more speciose, robust and efficient in resource use. Encounters between microbial communities are becoming increasingly frequent as a result of anthropogenic environmental change, and there is great interest in how the coalescence of microbial communities affects environmental and human health. Our study provides new insights into the mechanisms behind microbial community coalescence, and a framework to predict outcomes based on the interaction structures of parent communities.

Data availability

All the code used in our simulations, as well as that for reproducing the figures can be found in the GitHub repository: https://github.com/pablolich/coalescence_paper_analysis.

Files

journal.pcbi.1009584.pdf

Files (4.6 MB)

Name Size Download all
Article
md5:656fdb13e939efedb14d2efacdb54de8
1.9 MB Preview Download
Supporting information
md5:eff34ea7e9fe39571e0ad044d32c2e84
2.7 MB Preview Download

Additional details

Identifiers

DOI
10.1371/journal.pcbi.1009584
Other
oai:uchicago.tind.io:5894

Funding

Leverhulme Research Fellowship
RF-2020-653\2
NERC
NE/S000348/1

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Ecology and Evolution