Published July 1, 2025 | Version v1
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Structural basis of voltage-dependent gating in BK channels

  • 1. University of Chicago
  • 2. Universidad de Valparaíso

Description

The allosteric communication between the pore domain, voltage sensors, and Ca2+ binding sites in the calcium- and voltage-activated K+ channel (BK) underlies its physiological role as the preeminent signal integrator in excitable systems. BK displays shallow voltage sensitivity with very fast gating charge kinetics, yet little is known about the molecular underpinnings of this distinctive behavior. Here, we explore the mechanistic basis of coupling between voltage-sensing domains (VSDs) and calcium sensors in Aplysia BK by locking the VSDs in their activated (R196Q and R199Q) and resting (R202Q) states, with or without calcium. Cryo-EM structures of these mutants reveal unique tilts at the S4 C-terminal end, together with large side-chain rotameric excursions of the gating charges. Notably, the VSD resting structure (R202Q) also revealed BK in its elusive, fully closed state, highlighting the reciprocal relation between calcium and voltage sensors. These structures provide a plausible path where voltage and Ca2+ binding couple energetically and define the conformation of the pore domain and, thus, BK's full functional range.

Data availability

Cryo-EM density maps of aBK mutants have been deposited in the Electron Microscopy Data Bank under accession codes (EMDB): EMD-46903 (R1Q-apo), EMD-46901 (R1Q-Ca2+-bound), EMD-46939 (R2Q-apo), EMD-46918 (R2Q-Ca2+-bound), EMD-46963 (R3Q-apo), EMD-46956 (R3Q-Ca2+-bound), and EMD-46961 (F304A-Ca2+-bound). The atomic model of the aBK mutants has been deposited in the Protein Data Bank under accession code: 9DIC (R1Q-apo), 9DI8 (R1Q-Ca2+-bound), 9DJV (R2Q-apo), 9DIT (R2Q-Ca2+-bound), 9DKN (R3Q-apo), 9DKF (R3Q-Ca2+-bound), and 9DKL (F304A-Ca2+-bound). Previously published PDB used in this article for comparation purpose: 5TJI (WT-apo), 5TJ6 (WT-Ca2+-bound), 6ND0 (hBK-apo-mem1), 8GH9 (hBK-apo-mem2), 6V5A (hBK–L380P), 6V38 (hBK-Ca2+-bound), and 6V3G (hBK-apo). The initial and final configurations of the molecular dynamics trajectories, as well as output of HOLE program analysis are provided in Supplementary Data 1 folder. The source data underlying Fig. 1b, and Fig. 2b are provided in Source Data file. Source data are provided with this paper.

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Additional details

Identifiers

DOI
10.1038/s41467-025-60639-y
Other
oai:uchicago.tind.io:15603

Funding

Fondecyt
1230265
National Institutes of Health
R01GM030376
National Institutes of Health
R01-GM150272

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Biochemistry and Molecular Biology