Published February 27, 2018 | Version v1
Journal article Open

Conjunction of factors triggering waves of seasonal influenza

  • 1. University of Chicago
  • 2. Microsoft Research
  • 3. Columbia University

Description

Using several longitudinal datasets describing putative factors affecting influenza incidence and clinical data on the disease and health status of over 150 million human subjects observed over a decade, we investigated the source and the mechanistic triggers of influenza epidemics. We conclude that the initiation of a pan-continental influenza wave emerges from the simultaneous realization of a complex set of conditions. The strongest predictor groups are as follows, ranked by importance: (1) the host population's socio- and ethno-demographic properties; (2) weather variables pertaining to specific humidity, temperature, and solar radiation; (3) the virus' antigenic drift over time; (4) the host population'€™s land-based travel habits, and; (5) recent spatio-temporal dynamics, as reflected in the influenza wave auto-correlation. The models we infer are demonstrably predictive (area under the Receiver Operating Characteristic curve 80%) when tested with out-of-sample data, opening the door to the potential formulation of new population-level intervention and mitigation policies.

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Additional details

Identifiers

DOI
10.7554/eLife.30756
Other
oai:uchicago.tind.io:10019

Funding

National Institutes of Health
U01HL108634-01
National Institutes of Health
R01GM100467
National Institutes of Health
U01GM110748
National Institutes of Health
1P50MH094267
Defense Sciences Office, DARPA
W911NF1410333
National Institutes of Health
R01HL122712

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Genetics, Genomics, and Systems Biology, Human Genetics, Medicine
Center(s) or Institute(s)
Institute for Genomics and Systems Biology