PROTEINS WITH C N DIFFERENCES,,,,,,,,,,
Protein,Nexp-Cexp (log2FC),Ntrans-Ctrans (log2FC),Nstat-Cstat (log2FC),NCBI GI,Preferred_name,KEGG_ko,Function,Subsystem,locus,"* denotes that protein was detected in at least 13/18 samples, thus constituting ""full timecourse"""
"flagellin, partial",NA,-1.040598344,NA,gi|444237523,flaD,ko:K02406,Flagellin protein FlaD,Flagellum,locus|B878_24390,*
"adenylate kinase, partial",NA,NA,-0.704482382,gi|444237653,adk,ko:K00939,NA,NA,NA,*
ferrochelatase,0.693389516,NA,NA,gi|444237654,hemH,ko:K01772,"Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)",- none -,locus|B878_23893,*
hypothetical protein B878_23773,NA,1.012917673,NA,gi|444237682,NA,NA,FIG01202974: hypothetical protein,- none -,locus|B878_23773,*
disulfide bond formation protein,NA,NA,1.845919759,gi|444237707,dsbA,ko:K03673,Periplasmic thiol:disulfide interchange protein DsbA,Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange,locus|B878_23638,*
LysR family transcriptional regulator,NA,NA,-0.550861519,gi|444237717,aphB,ko:K10918,Cyn operon transcriptional activator,"DNA-binding regulatory proteins, strays",locus|B878_23628,*
acetyl-CoA carboxylase subunit beta,NA,NA,-1.378876261,gi|444237739,accD,ko:K01963,Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2),Colicin V and Bacteriocin Production Cluster;
EC 6.4.1.- Ligases that form carbon-carbon bonds;
Fatty Acid Biosynthesis FASII,locus|B878_23533,*
"RNA binding protein, partial",NA,-0.263613779,NA,gi|444237772,NA,NA,RNA-binding protein,- none -,locus|B878_23353,*
pyruvate dehydrogenase subunit E1,NA,NA,-0.634633505,gi|444237783,aceE,ko:K00163,Pyruvate dehydrogenase E1 component (EC 1.2.4.1),"Dehydrogenase complexes;
Methionine Degradation;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_23313,*
threonyl-tRNA ligase,NA,NA,-0.859344831,gi|444237790,thrS,ko:K01868,Threonyl-tRNA synthetase (EC 6.1.1.3),"tRNA aminoacylation, Thr",locus|B878_23273,*
50S ribosomal protein L20,NA,0.666651246,1.517040347,gi|444237793,rplT,ko:K02887,LSU ribosomal protein L20p,Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial,locus|B878_23288,*
hypothetical protein B878_23253,NA,-0.737808122,-0.648774877,gi|444237802,NA,NA,"PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene",- none -,locus|B878_23253,*
putative hydroperoxide peroxidase,0.845993119,0.623281117,1.482902872,gi|444237816,NA,NA,osmotically inducible protein OsmC,- none -,locus|B878_23178,*
hypothetical protein B878_23058,NA,-0.608308791,-1.494713485,gi|444237842,clpB,ko:K03695,ClpB protein,"Protein chaperones;
Proteolysis in bacteria, ATP-dependent;
Type VI secretion systems;
USS-DB-7",locus|B878_23058,*
PTS glucose-specific subunit IIBC,NA,NA,-1.678170373,gi|444237856,ptsG,"ko:K02778,ko:K02779","PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)",Trehalose Uptake and Utilization,locus|B878_22976,*
hypothetical protein B878_22857,NA,NA,-0.737397319,gi|444237879,NA,ko:K03585,Probable Co/Zn/Cd efflux system membrane fusion protein,Cobalt-zinc-cadmium resistance,locus|B878_22857,*
ATP-dependent DNA helicase Rep,NA,0.564781205,0.666913192,gi|444237881,rep,ko:K03656,ATP-dependent DNA helicase Rep,"DNA repair, bacterial UvrD and related helicases",locus|B878_22867,*
aspartate-semialdehyde dehydrogenase,NA,NA,-0.415670875,gi|444237895,asd,ko:K00133,Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11),Lysine Biosynthesis DAP Pathway;
Threonine and Homoserine Biosynthesis,locus|B878_22782,*
3-oxoacyl-ACP synthase,0.589140428,0.8297439,NA,gi|444237897,fabB,ko:K00647,"3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)",Fatty Acid Biosynthesis FASII,locus|B878_22792,*
sulfite reductase subunit beta,NA,-0.603741254,NA,gi|444237901,cysI,ko:K00381,Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_22732,*
sulfite reductase (NADPH) flavoprotein alpha-component,1.411967375,NA,NA,gi|444237902,cysJ,ko:K00380,Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_22737,*
gamma-glutamyltranspeptidase,NA,-0.890757079,NA,gi|444237928,ggt,ko:K00681,Gamma-glutamyltranspeptidase (EC 2.3.2.2),Glutathione: Biosynthesis and gamma-glutamyl cycle,locus|B878_22657,*
hypothetical protein B878_22222,0.87308502,NA,NA,gi|444238005,grxD,ko:K07390,Glutaredoxin-related protein,Glutaredoxins,locus|B878_22222,*
superoxide dismutase,0.703964069,1.12440987,1.618317071,gi|444238006,sodB,ko:K04564,Superoxide dismutase [Fe] (EC 1.15.1.1),Oxidative stress;
Protection from Reactive Oxygen Species,locus|B878_22227,*
bifunctional acetaldehyde-CoA/alcohol dehydrogenase,-1.0052179,-1.376066397,-2.563109322,gi|444238009,adhE,ko:K04072,Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10),"Biphenyl Degradation;
Fermentations: Lactate;
Fermentations: Mixed acid;
Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_22242,*
urocanate hydratase,NA,-1.006397411,NA,gi|444238040,hutU,ko:K01712,Urocanate hydratase (EC 4.2.1.49),Histidine Degradation,locus|B878_22087,*
hypothetical protein B878_22012,NA,-0.427645489,-1.679416435,gi|444238049,NA,ko:K07285,Starvation lipoprotein Slp paralog,Carbon Starvation,locus|B878_22012,*
glycerol kinase,NA,-1.112444243,-2.067839176,gi|444238065,glpK,ko:K00864,Glycerol kinase (EC 2.7.1.30),Glycerol and Glycerol-3-phosphate Uptake and Utilization;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_21962,*
"2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase",NA,NA,-0.899562361,gi|444238069,dapD,ko:K00674,"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)",Lysine Biosynthesis DAP Pathway,locus|B878_21982,*
hypothetical protein B878_21987,1.777197622,NA,NA,gi|444238070,BT0173,NA,FIG01199772: hypothetical protein,- none -,locus|B878_21987,*
aromatic amino acid aminotransferase,NA,0.522838769,0.937480459,gi|444238074,NA,ko:K00813,Aspartate aminotransferase (EC 2.6.1.1),"Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis",locus|B878_21867,*
transcription termination factor Rho,NA,NA,-0.98144937,gi|444238120,rho,ko:K03628,Transcription termination factor Rho,Transcription factors bacterial,locus|B878_21682,*
ATP-dependent RNA helicase RhlB,-0.908737861,NA,-1.063831015,gi|444238122,rhlB,ko:K03732,ATP-dependent RNA helicase RhlB,"ATP-dependent RNA helicases, bacterial",locus|B878_21692,*
aspartate kinase III,NA,-0.512698975,NA,gi|444238151,lysC,ko:K00928,Aspartokinase (EC 2.7.2.4),Lysine Biosynthesis DAP Pathway;
Threonine and Homoserine Biosynthesis,locus|B878_21553,*
B12-dependent methionine synthase,NA,NA,-1.629330196,gi|444238152,metH,ko:K00548,5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13),Methionine Biosynthesis,locus|B878_21558,*
hypothetical protein B878_21389,0.716634518,0.848379285,NA,gi|444238172,NA,NA,FIG01199646: hypothetical protein,- none -,locus|B878_21389,*
transaldolase B,0.654024392,NA,NA,gi|444238192,tal,ko:K00616,Transaldolase (EC 2.2.1.2),Pentose phosphate pathway,locus|B878_21364,*
GTP-binding protein YchF,1.134974323,NA,-1.002752334,gi|444238230,ychF,ko:K06942,GTP-binding and nucleic acid-binding protein YchF,Universal GTPases,locus|B878_21100,*
peptide chain release factor 1,NA,NA,0.727287612,gi|444238236,prfA,ko:K02835,Peptide chain release factor 1,A Gammaproteobacteria Cluster Relating to Translation;
Translation termination factors bacterial,locus|B878_21130,*
bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor,NA,-0.872052217,-1.024479643,gi|444238242,ushA,ko:K11751,UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5),pyrimidine conversions,locus|B878_21160,*
"50S ribosomal protein L28, partial",NA,0.855798421,2.279979952,gi|444238292,rpmB,ko:K02902,NA,NA,NA,*
"bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, partial",NA,0.536833775,NA,gi|444238314,glmU,ko:K04042,N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157),Peptidoglycan Biosynthesis;
Peptidoglycan Biosynthesis;
Sialic Acid Metabolism;
Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_20720,*
dihydroxy-acid dehydratase,NA,NA,0.38640259,gi|444238320,ilvD,ko:K01687,Dihydroxy-acid dehydratase (EC 4.2.1.9),Branched-Chain Amino Acid Biosynthesis,locus|B878_20750,*
branched-chain amino acid aminotransferase,0.533209601,NA,0.881674613,gi|444238321,ilvE,ko:K00826,Branched-chain amino acid aminotransferase (EC 2.6.1.42),Alanine biosynthesis;
Branched-Chain Amino Acid Biosynthesis;
Isoleucine degradation;
Leucine Biosynthesis;
Pyruvate Alanine Serine Interconversions;
Valine degradation,locus|B878_20755,*
hypothetical protein B878_20715,NA,-0.515503468,-0.869072094,gi|444238346,NA,ko:K03286,Outer membrane protein A precursor,Osmoregulation,locus|B878_20715,*
N5-carboxyaminoimidazole ribonucleotide mutase,NA,0.463147982,1.204085712,gi|444238353,purE,ko:K01588,Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21),De Novo Purine Biosynthesis,locus|B878_20560,*
N-acetylneuraminate synthase,NA,NA,0.534944726,gi|444238370,NA,NA,N-acetylneuraminate synthase (EC 2.5.1.56),CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism,locus|B878_20470,*
hypothetical protein B878_20500,NA,-0.260811864,NA,gi|444238376,NA,NA,FIG01203002: hypothetical protein,- none -,locus|B878_20500,*
ADP-L-glycero-D-mannoheptose-6-epimerase,NA,NA,-1.048408702,gi|444238381,hldD,ko:K03274,ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20),LOS core oligosaccharide biosynthesis;
Vibrio Core Oligosaccharide Biosynthesis,locus|B878_20525,*
hypothetical protein B878_20400,NA,0.546893686,1.64879188,gi|444238395,lptA,ko:K09774,Lipopolysaccharide export system protein LptA,Lipopolysaccharide assembly,locus|B878_20400,*
ribosome-associated protein Y,NA,NA,0.989315067,gi|444238398,yhbH,ko:K05808,Ribosome hibernation protein YhbH,Ribosome activity modulation,locus|B878_20415,*
NAD(P) transhydrogenase subunit alpha,NA,NA,-1.130274397,gi|444238414,pntA,ko:K00324,NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2),Phosphate metabolism,locus|B878_20285,*
purine nucleoside phosphorylase,NA,NA,1.070660185,gi|444238430,deoD2,ko:K03784,Purine nucleoside phosphorylase (EC 2.4.2.1),Deoxyribose and Deoxynucleoside Catabolism;
pyrimidine conversions,locus|B878_20180,*
"putative prophage encoded two-component system histidine kinase, partial",NA,2.605723173,NA,gi|444238446,NA,NA,"putative two-component system sensor histidine kinase, putative heat shock protein",- none -,locus|B878_20070,*
hypothetical protein B878_20130,NA,NA,-1.076460324,gi|444238458,NA,NA,UPF0701 protein YicC,CBSS-323097.3.peg.2594,locus|B878_20130,*
ribonuclease PH,NA,0.803650314,NA,gi|444238459,rph,ko:K00989,Ribonuclease PH (EC 2.7.7.56),Heat shock dnaK gene cluster extended;
tRNA processing,locus|B878_20135,*
thiol:disulfide interchange protein DsbA,-2.336659419,-2.59259617,-0.921878522,gi|444238477,NA,ko:K03673,Periplasmic thiol:disulfide interchange protein DsbA,Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange,locus|B878_20005,*
hypothetical protein B878_19880,NA,-0.583432276,-1.618366589,gi|444238493,lpp,ko:K06078,Outer membrane lipoprotein,- none -,locus|B878_19880,*
ATP-dependent RNA helicase,NA,0.450353215,NA,gi|444238494,NA,NA,ATP-dependent RNA helicase VCA0061,"ATP-dependent RNA helicases, bacterial",locus|B878_19885,*
phosphate ABC transporter periplasmic protein,NA,-4.272536214,NA,gi|444238502,pstS,ko:K02040,"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)",High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_19925,*
flavodoxin FldA,NA,NA,-0.597582839,gi|444238515,fldA,ko:K03839,Flavodoxin 1,Flavodoxin,locus|B878_19815,*
ferric uptake regulator,0.62462703,0.772388257,NA,gi|444238517,fur,ko:K03711,Ferric uptake regulation protein FUR,Bacterial RNA-metabolizing Zn-dependent hydrolases;
Oxidative stress;
Transport of Iron,locus|B878_19825,*
hypothetical protein B878_19755,NA,-1.884868748,-2.670141365,gi|444238540,NA,NA,ATPase of the AAA+ class,- none -,locus|B878_19755,*
ABC transporter substrate-binding protein,NA,-3.430244597,-1.631165582,gi|444238544,NA,ko:K02012,"Ferric iron ABC transporter, iron-binding protein",Iron acquisition in Streptococcus;
Transport of Iron,locus|B878_19775,*
"hypothetical protein B878_19500, partial",NA,NA,1.595333155,gi|444238562,NA,NA,hypothetical protein,- none -,locus|B878_19500,*
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase,NA,-0.987012914,-2.55618213,gi|444238564,metE,ko:K00549,5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14),Methionine Biosynthesis,locus|B878_19510,*
response regulator,-0.898582788,-0.919975903,-1.328627303,gi|444238573,NA,NA,Putaive two-component response regulator,- none -,locus|B878_19555,*
hypothetical protein B878_19450,NA,-0.455071302,-0.616660751,gi|444238590,NA,ko:K03286,Outer membrane protein A precursor,Osmoregulation,locus|B878_19450,*
"peptidase M14, carboxypeptidase A",0.644892843,NA,NA,gi|444238591,NA,NA,Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-),CBSS-243277.1.peg.4359;
Murein Hydrolases;
Peptidoglycan Biosynthesis,locus|B878_19455,*
hypothetical protein B878_19385,NA,-1.088920126,-1.68762655,gi|444238619,NA,NA,FIG01206490: hypothetical protein,- none -,locus|B878_19385,*
hypothetical protein B878_19390,NA,-1.905818636,-2.273392467,gi|444238620,NA,NA,FIG01203444: hypothetical protein,- none -,locus|B878_19390,*
transketolase,NA,-0.281874996,-0.905696909,gi|444238652,tkt,ko:K00615,Transketolase (EC 2.2.1.1),Pentose phosphate pathway,locus|B878_19045,*
glutathione synthetase,0.646246213,NA,0.760460216,gi|444238658,gshB,ko:K01920,Glutathione synthetase (EC 6.3.2.3),CBSS-320372.3.peg.6046;
Glutathione: Biosynthesis and gamma-glutamyl cycle;
Heat shock dnaK gene cluster extended,locus|B878_19075,*
oxidoreductase,0.55333041,-0.477950748,NA,gi|444238688,ydhF,NA,"Oxidoreductase, aldo/keto reductase family",- none -,locus|B878_18980,*
peptidase,NA,0.571676867,NA,gi|444238703,NA,ko:K03592,"TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex (PMID 12029038)",- none -,locus|B878_18785,*
peptidase,NA,0.428818653,1.415696038,gi|444238704,NA,ko:K03568,"TldD protein, part of TldE/TldD proteolytic complex",CBSS-316057.3.peg.563;
CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex,locus|B878_18790,*
nitrate/sulfonate/bicarbonate transport system periplasmic protein,0.572960791,0.772765677,1.626623669,gi|444238707,NA,ko:K15598,"Hydroxymethylpyrimidine ABC transporter, substrate-binding component",Thiamin biosynthesis,locus|B878_18815,*
fumarate hydratase,NA,NA,0.862780441,gi|444238738,fumA,ko:K01676,"Fumarate hydratase class I, aerobic (EC 4.2.1.2)",Serine-glyoxylate cycle;
TCA Cycle,locus|B878_18730,*
peptidoglycan-associated lipoprotein,NA,-0.432291581,NA,gi|444238784,pal,ko:K03640,18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor,Ton and Tol transport systems,locus|B878_18533,*
heat shock protein 90,NA,NA,-1.034948241,gi|444238792,htpG,ko:K04079,Chaperone protein HtpG,Protein chaperones,locus|B878_18333,*
transmembrane regulatory protein ToxS,NA,-0.529829132,NA,gi|444238794,toxS,ko:K10922,Transmembrane regulatory protein ToxS,- none -,locus|B878_18343,*
hypothetical protein B878_18378,1.862308402,NA,NA,gi|444238801,ybbN,ko:K05838,COG3118: Thioredoxin domain-containing protein EC-YbbN,- none -,locus|B878_18378,*
hypothetical protein B878_18383,NA,-0.389675542,-0.78928186,gi|444238802,qmcA,NA,Protein QmcA (possibly involved in integral membrane quality control),CBSS-316057.3.peg.659,locus|B878_18383,*
cell division protein ZipA,NA,-0.751829259,-1.096696359,gi|444238808,zipA,ko:K03528,Cell division protein ZipA,Bacterial Cytoskeleton,locus|B878_18413,*
cysteine synthase A,0.711246599,NA,NA,gi|444238810,cysK,ko:K01738,Cysteine synthase (EC 2.5.1.47),Cysteine Biosynthesis;
Methionine Biosynthesis,locus|B878_18423,*
phosphocarrier protein HPr,1.043863705,NA,1.157822913,gi|444238811,ptsH,ko:K02784,"Phosphotransferase system, phosphocarrier protein HPr",Mannitol Utilization,locus|B878_18428,*
phosphoenolpyruvate-protein phosphotransferase,NA,NA,-0.495842117,gi|444238812,ptsI,ko:K08483,Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9),Mannitol Utilization,locus|B878_18433,*
PTS system glucose-specific transporter subunit IIA,0.702836578,0.568382,0.750216502,gi|444238813,crr,ko:K02777,"PTS system, glucose-specific IIA component (EC 2.7.1.199)",Trehalose Uptake and Utilization,locus|B878_18438,*
hypothetical protein B878_18313,NA,0.477887249,1.019924325,gi|444238835,NA,NA,putative transport protein,- none -,locus|B878_18313,*
hypothetical protein B878_18103,NA,0.49128006,0.748052276,gi|444238848,cspV,ko:K03704,Cold shock protein of CSP family,"Cold shock, CspA family of proteins",locus|B878_18103,*
cation transport ATPase,-0.878931153,-0.744116915,NA,gi|444238874,copA,ko:K17686,"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)",Copper homeostasis,locus|B878_17951,*
glutamyl-tRNA ligase,NA,NA,-1.165347232,gi|444238877,gltX,ko:K01885,tRNA glutamyl-Q(34)-Glu synthetase (EC 6.1.1.17),"tRNA aminoacylation, Glu and Gln",locus|B878_17966,*
"flagellar hook protein FlgE, partial",NA,-1.127823635,NA,gi|444238894,flgE,ko:K02390,NA,NA,NA,*
zinc protease,NA,-0.873711001,NA,gi|444238908,NA,ko:K07263,"Zinc protease, insulinase family",- none -,locus|B878_17876,*
hypothetical protein B878_17801,NA,0.820760457,NA,gi|444238938,VVA1695,ko:K03497,Chromosome (plasmid) partitioning protein ParB,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_17801,*
hypothetical protein B878_17616,NA,NA,-0.7721619,gi|444238951,yeeN,NA,FIG007491: hypothetical protein YeeN,"Riboflavin, FMN and FAD metabolism Extended;
RuvABC plus a hypothetical",locus|B878_17616,*
multifunctional aminopeptidase A,-0.837907072,NA,NA,gi|444238978,pepA,ko:K01255,Cytosol aminopeptidase PepA (EC 3.4.11.1),Dehydrogenase complexes;
EC 3.4.11.- Aminopeptidases,locus|B878_17509,*
aspartate carbamoyltransferase regulatory subunit,-0.523118854,NA,NA,gi|444238988,pyrI,ko:K00610,Aspartate carbamoyltransferase regulatory chain (PyrI),De Novo Pyrimidine Synthesis,locus|B878_17559,*
succinyl-CoA synthetase subunit alpha,NA,NA,-0.690765032,gi|444239006,sucD,ko:K01902,Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5),Serine-glyoxylate cycle;
TCA Cycle,locus|B878_17399,*
succinyl-CoA synthetase subunit beta,NA,NA,-0.654753333,gi|444239007,sucC,ko:K01903,Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5),Serine-glyoxylate cycle;
TCA Cycle,locus|B878_17404,*
dihydrolipoamide succinyltransferase,NA,NA,-0.841549171,gi|444239008,sucB,ko:K00658,Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61),Dehydrogenase complexes;
TCA Cycle,locus|B878_17409,*
2-oxoglutarate dehydrogenase E1 component,NA,-0.487405518,-1.580185515,gi|444239009,sucA,ko:K00164,2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2),Dehydrogenase complexes;
TCA Cycle,locus|B878_17414,*
succinate dehydrogenase iron-sulfur subunit,NA,NA,-0.64098644,gi|444239010,sdhB,ko:K00240,"Succinate dehydrogenase (quinone), iron-sulfur subunit (EC 1.3.5.1)",Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle,locus|B878_17419,*
lysyl-tRNA ligase,NA,NA,-0.599367524,gi|444239021,lysS,ko:K04567,Lysyl-tRNA synthetase (class II) (EC 6.1.1.6),- none -,locus|B878_17214,*
thiol:disulfide interchange protein DsbC,NA,0.539110525,0.581736632,gi|444239024,dsbC,ko:K03981,Thiol:disulfide interchange protein DsbC,Periplasmic disulfide interchange,locus|B878_17229,*
hypothetical protein B878_17264,NA,NA,-2.042803763,gi|444239031,yaaA,ko:K09861,UPF0246 protein YaaA,- none -,locus|B878_17264,*
recombination associated protein,NA,NA,-1.003334001,gi|444239047,rdgC,ko:K03554,DNA recombination-dependent growth factor C,"DNA repair, bacterial",locus|B878_17075,*
response regulator,-2.060404,-2.687455378,-3.474916726,gi|444239048,phoB,ko:K07657,Phosphate regulon transcriptional regulatory protein PhoB (SphR),High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_17080,*
hypothetical protein B878_17140,NA,NA,0.37304732,gi|444239058,NA,ko:K03386,Alkyl hydroperoxide reductase subunit C-like protein,Oxidative stress;
Thioredoxin-disulfide reductase,locus|B878_17140,*
isocitrate lyase,NA,-1.557375324,-1.129161399,gi|444239061,aceA,ko:K01637,Isocitrate lyase (EC 4.1.3.1),Glyoxylate bypass;
Serine-glyoxylate cycle,locus|B878_17155,*
50S ribosomal protein L19,NA,0.761644236,0.89014581,gi|444239074,rplS,ko:K02884,LSU ribosomal protein L19p,Ribosome LSU bacterial,locus|B878_16940,*
16S rRNA-processing protein RimM,1.14965892,NA,NA,gi|444239076,rimM,ko:K02860,16S rRNA processing protein RimM,Ribosome biogenesis bacterial,locus|B878_16950,*
30S ribosomal protein S16,NA,1.423279014,1.114608088,gi|444239077,rpsP,ko:K02959,SSU ribosomal protein S16p,Ribosome SSU bacterial,locus|B878_16955,*
S-ribosylhomocysteinase,NA,0.837303639,1.92306007,gi|444239081,luxS,ko:K07173,S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS,Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon);
Methionine Biosynthesis;
Methionine Degradation,locus|B878_16975,*
peptidase,NA,NA,0.653577742,gi|444239084,NA,ko:K07263,"Protease, insulinase family/protease, insulinase family",- none -,locus|B878_16990,*
"PrkA family serine protein kinase, partial",NA,-0.716717959,-2.29392705,gi|444239097,prkA,ko:K07180,NA,NA,NA,*
pyruvate-formate lyase,-0.75069218,-1.623047256,-1.994906918,gi|444239102,pflB,ko:K00656,Pyruvate formate-lyase (EC 2.3.1.54),Butanol Biosynthesis;
Fermentations: Mixed acid,locus|B878_16805,*
54K polar flagellar sheath protein A,NA,-0.343017348,-0.915529943,gi|444239104,NA,NA,54K polar flagellar sheath protein A,- none -,locus|B878_16815,*
"Arginine ornithine ABC transporter, ATP-binding protein AotP",NA,-0.815791401,-0.510760066,gi|444239105,aotP,ko:K10025,"Arginine/ornithine ABC transporter, ATP-binding protein AotP",Arginine and Ornithine Degradation,locus|B878_16820,*
hypothetical protein B878_16825,0.81441011,NA,0.938258166,gi|444239106,aotJ,ko:K10022,Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1),Arginine and Ornithine Degradation,locus|B878_16825,*
hypothetical protein B878_16870,NA,NA,1.893641364,gi|444239115,NA,ko:K09909,FIG01199548: hypothetical protein,- none -,locus|B878_16870,*
isocitrate dehydrogenase,NA,0.350095548,NA,gi|444239117,icd,ko:K00031,Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42),TCA Cycle,locus|B878_16880,*
phosphoheptose isomerase,NA,NA,-0.617929239,gi|444239131,gmhA,ko:K03271,Phosphoheptose isomerase 1 (EC 5.3.1.-),Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis,locus|B878_16640,*
arsenate reductase,NA,NA,-0.65243819,gi|444239140,arsC,ko:K00537,Arsenate reductase (EC 1.20.4.1),Anaerobic respiratory reductases;
Arsenic resistance,locus|B878_16685,*
dihydrodipicolinate synthase,NA,NA,0.78559597,gi|444239146,dapA,ko:K01714,4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7),Lysine Biosynthesis DAP Pathway,locus|B878_16715,*
succinyl-diaminopimelate desuccinylase,0.326389763,0.272598817,NA,gi|444239150,dapE,ko:K01439,"N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)",A Glutathione-dependent Thiol Reductase Associated with a Step in Lysine Biosynthesis;
Arginine Biosynthesis extended;
Lysine Biosynthesis DAP Pathway,locus|B878_16735,*
preprotein translocase subunit SecE,NA,0.387111031,NA,gi|444239219,secE,ko:K03073,Preprotein translocase subunit SecE (TC 3.A.5.1.1),- none -,locus|B878_16190,*
transcription antitermination protein NusG,NA,0.525860991,0.932634892,gi|444239220,nusG,ko:K02601,Transcription antitermination protein NusG,Transcription factors bacterial,locus|B878_16195,*
50S ribosomal protein L11,NA,1.132175874,1.341632478,gi|444239221,rplK,ko:K02867,LSU ribosomal protein L11p (L12e),Ribosome LSU bacterial,locus|B878_16200,*
50S ribosomal protein L1,NA,1.536049018,1.280089467,gi|444239222,rplA,ko:K02863,LSU ribosomal protein L1p (L10Ae),Ribosome LSU bacterial,locus|B878_16205,*
50S ribosomal protein L10,1.229084622,1.954472023,2.87887534,gi|444239223,rplJ,ko:K02864,LSU ribosomal protein L10p (P0),Ribosome LSU bacterial,locus|B878_16210,*
50S ribosomal protein L7/L12,NA,1.137956012,2.77732654,gi|444239225,rplL,ko:K02935,LSU ribosomal protein L7p/L12p (P1/P2),Ribosome LSU bacterial,locus|B878_16220,*
DNA-directed RNA polymerase subunit beta,NA,NA,-0.846790351,gi|444239226,rpoB,ko:K03043,DNA-directed RNA polymerase beta subunit (EC 2.7.7.6),Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial,locus|B878_16225,*
DNA-directed RNA polymerase subunit beta',NA,NA,-0.694403905,gi|444239227,rpoC,ko:K03046,DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6),Mycobacterium virulence operon involved in DNA transcription;
RNA polymerase bacterial,locus|B878_16230,*
anti-RNA polymerase sigma 70 factor,NA,NA,0.830572621,gi|444239228,rsd,ko:K07740,Regulator of sigma D,- none -,locus|B878_16235,*
DNA-binding protein,NA,NA,-1.036374608,gi|444239234,hupA,ko:K05787,DNA-binding protein HU-alpha,"DNA structural proteins, bacterial",locus|B878_16275,*
rod shape-determining protein MreB,NA,NA,-1.149983649,gi|444239249,mreB,ko:K03569,Rod shape-determining protein MreB,Bacterial Cell Division;
Bacterial Cytoskeleton,locus|B878_16075,*
hypothetical protein B878_16080,-0.624272533,NA,NA,gi|444239250,NA,ko:K12287,MSHA biogenesis protein MshQ,Mannose-sensitive hemagglutinin type 4 pilus,locus|B878_16080,*
MSHA pilin protein MshA,NA,-0.499436014,1.181409974,gi|444239256,NA,ko:K10924,MSHA pilin protein MshA,Mannose-sensitive hemagglutinin type 4 pilus,locus|B878_16110,*
ssDNA-binding protein,NA,0.738550219,0.821547551,gi|444239267,ssb,ko:K03111,Single-stranded DNA-binding protein,"DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway",locus|B878_16165,*
UTP-glucose-1-phosphate uridylyltransferase,NA,NA,0.960639931,gi|444239269,galU,ko:K00963,UTP---glucose-1-phosphate uridylyltransferase (EC 2.7.7.9),Streptococcal Hyaluronic Acid Capsule,locus|B878_16175,*
phosphoribosylformylglycinamidine synthase,-0.66772621,NA,-0.822712606,gi|444239275,purL,ko:K01952,"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)",De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis,locus|B878_15925,*
chaperone protein DnaJ,NA,NA,-1.170714469,gi|444239285,dnaJ,ko:K03686,Chaperone protein DnaJ,Heat shock dnaK gene cluster extended;
Protein chaperones,locus|B878_15975,*
molecular chaperone DnaK,0.431215088,0.395545038,NA,gi|444239286,dnaK,ko:K04043,Chaperone protein DnaK,Heat shock dnaK gene cluster extended;
Protein chaperones,locus|B878_15980,*
heat shock protein GrpE,NA,NA,0.461358669,gi|444239288,grpE,ko:K03687,Heat shock protein GrpE,Heat shock dnaK gene cluster extended;
Protein chaperones,locus|B878_15990,*
ATP phosphoribosyltransferase,NA,NA,0.631282377,gi|444239302,hisG,ko:K00765,ATP phosphoribosyltransferase (EC 2.4.2.17),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15755,*
bifunctional histidinal dehydrogenase/ histidinol dehydrogenase,NA,-0.858843846,-0.894222737,gi|444239303,hisD,ko:K00013,Histidinol dehydrogenase (EC 1.1.1.23),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15760,*
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase,NA,NA,1.147341311,gi|444239307,hisA,ko:K01814,Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15780,*
thymidine kinase,NA,-0.570142739,NA,gi|444239315,tdk,ko:K00857,Thymidine kinase (EC 2.7.1.21),Folate Biosynthesis;
pyrimidine conversions,locus|B878_15820,*
heme biosynthesis protein,-0.830138976,-1.01895292,-1.465833419,gi|444239334,hemY,ko:K02498,Homolog of E. coli HemY protein,- none -,locus|B878_15575,*
diaminopimelate decarboxylase,0.349181988,NA,NA,gi|444239341,lysA,ko:K01586,Diaminopimelate decarboxylase (EC 4.1.1.20),CBSS-323850.3.peg.3269;
Lysine Biosynthesis DAP Pathway,locus|B878_15610,*
hypothetical protein B878_15490,NA,NA,2.005329004,gi|444239383,NA,ko:K13893,"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_15490,*
30S ribosomal protein S1,NA,0.508473598,0.654263008,gi|444239388,rpsA,ko:K02945,SSU ribosomal protein S1p,Cell division-ribosomal stress proteins cluster;
Ribosome SSU bacterial,locus|B878_15515,*
cytidylate kinase,NA,NA,-0.644126758,gi|444239389,cmk,ko:K00945,Cytidylate kinase (EC 2.7.4.25),pyrimidine conversions,locus|B878_15520,*
ABC-type dipeptide transporter periplasmic component,0.434814072,NA,1.114256223,gi|444239401,dppA,ko:K02035,"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)",ABC transporter dipeptide (TC 3.A.1.5.2);
Bacterial Chemotaxis,locus|B878_15260,*
glutathione reductase,NA,NA,1.209968102,gi|444239414,gor,ko:K00383,Glutathione reductase (EC 1.8.1.7),Glutathione: Redox cycle,locus|B878_15325,*
oligopeptidase A,NA,NA,-1.362924511,gi|444239417,prlC,ko:K01414,Oligopeptidase A (EC 3.4.24.70),Protein degradation,locus|B878_15340,*
universal stress protein,NA,-0.612680994,NA,gi|444239423,uspA,ko:K06149,Universal stress protein A,- none -,locus|B878_15370,*
ferritin,NA,0.604140499,1.609027297,gi|444239424,ftnA,ko:K02217,Bacterial non-heme ferritin (EC 1.16.3.2),- none -,locus|B878_15375,*
thioredoxin reductase,NA,NA,1.30302659,gi|444239435,trxB,ko:K00384,Thioredoxin reductase (EC 1.8.1.9),Thioredoxin-disulfide reductase;
pyrimidine conversions,locus|B878_15120,*
phosphoribosylaminoimidazole-succinocarboxamide synthase,NA,NA,-1.461455837,gi|444239447,purC,ko:K01923,Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6),CBSS-251221.1.peg.1863;
De Novo Purine Biosynthesis,locus|B878_15180,*
hypothetical protein B878_15220,NA,0.535521615,NA,gi|444239455,ydiJ,NA,"Fe-S protein, homolog of lactate dehydrogenase SO1521",- none -,locus|B878_15220,*
hypothetical protein B878_14950,NA,NA,1.353574308,gi|444239513,VVA1136,NA,Multidrug resistance protein D,- none -,locus|B878_14950,*
hypothetical protein B878_14955,NA,NA,0.405553961,gi|444239514,VPA0521,NA,FIG01199964: hypothetical protein,- none -,locus|B878_14955,*
hypothetical protein B878_14975,NA,-5.50200987,-4.803419875,gi|444239518,NA,NA,Putative outer membrane protein,- none -,locus|B878_14975,*
"hypothetical protein B878_14820, partial",NA,-0.950754859,NA,gi|444239544,NA,NA,RTX toxins and related Ca2+-binding proteins,- none -,locus|B878_14820,*
30S ribosomal protein S20,NA,0.900334616,NA,gi|444239554,rpsT,ko:K02968,SSU ribosomal protein S20p,Ribosome SSU bacterial,locus|B878_14580,*
isoleucyl-tRNA ligase,NA,NA,-0.715894034,gi|444239557,ileS,ko:K01870,Isoleucyl-tRNA synthetase (EC 6.1.1.5),- none -,locus|B878_14595,*
ABC transporter ATP-binding protein,NA,NA,-2.011829385,gi|444239573,yjjK,NA,"ABC transporter, ATP-binding protein",- none -,locus|B878_14675,*
soluble lytic murein transglycosylase,NA,-0.736026461,NA,gi|444239574,slt,ko:K08309,Soluble lytic murein transglycosylase precursor (EC 3.2.1.-),Murein Hydrolases,locus|B878_14680,*
hypothetical protein B878_14185,1.503204152,1.506136318,1.636527539,gi|444239634,NA,NA,hypothetical protein,- none -,locus|B878_14185,*
prolyl oligopeptidase,NA,-0.334764286,NA,gi|444239649,NA,NA,putative peptidase,- none -,locus|B878_14260,*
S-(hydroxymethyl)glutathione dehydrogenase,0.904455463,NA,-1.145731347,gi|444239657,frmA,ko:K00121,S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284),Glutathione-dependent pathway of formaldehyde detoxification,locus|B878_14300,*
esterase,NA,NA,-0.769072837,gi|444239658,yeiG,ko:K01070,S-formylglutathione hydrolase (EC 3.1.2.12),Glutathione-dependent pathway of formaldehyde detoxification,locus|B878_14305,*
hypothetical protein B878_13975,-0.485281389,NA,NA,gi|444239671,NA,NA,hypothetical protein,- none -,locus|B878_13975,*
plasmid partition protein ParB,-0.709832827,NA,NA,gi|444239735,NA,ko:K03497,Chromosome (plasmid) partitioning protein ParB,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_13930,*
F0F1 ATP synthase subunit gamma,NA,NA,0.885919055,gi|444239742,atpG,ko:K02115,ATP synthase gamma chain (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_13545,*
F0F1 ATP synthase subunit alpha,NA,0.298586839,0.418932624,gi|444239743,atpA,ko:K02111,ATP synthase alpha chain (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_13550,*
F0F1 ATP synthase subunit delta,NA,0.702582852,1.576285734,gi|444239744,atpH,ko:K02113,ATP synthase delta chain (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_13555,*
F0F1 ATP synthase subunit B,NA,NA,-0.934302351,gi|444239745,atpF,ko:K02109,ATP synthase F0 sector subunit b (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_13560,*
F0F1 ATP synthase subunit A,NA,NA,-0.755348407,gi|444239747,atpB,ko:K02108,ATP synthase F0 sector subunit a (EC 7.1.2.2),F0F1-type ATP synthase,locus|B878_13570,*
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,NA,0.755975714,NA,gi|444239751,gidA,ko:K03495,tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA,- none -,locus|B878_13600,*
tRNA modification GTPase TrmE,NA,-0.564223118,-1.751018082,gi|444239753,mnmE,ko:K03650,GTPase and tRNA-U34 5-formylation enzyme TrmE,Cell Division Subsystem including YidCD;
Universal GTPases,locus|B878_13610,*
membrane protein insertase,NA,NA,-0.572289939,gi|444239754,yidC,ko:K03217,"Inner membrane protein translocase component YidC, long form",Cell Division Subsystem including YidCD,locus|B878_13615,*
ABC amino acid transporter periplasmic component,0.739383106,NA,NA,gi|444239760,patH,ko:K16961,"Amino acid ABC transporter, periplasmic amino acid-binding portion",- none -,locus|B878_13645,*
DNA gyrase subunit B,NA,0.573235902,NA,gi|444239764,gyrB,ko:K02470,DNA gyrase subunit B (EC 5.99.1.3),"Cell Division Subsystem including YidCD;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones",locus|B878_13665,*
heat shock protein,1.057638818,NA,2.361990883,gi|444239765,ibpA,ko:K04080,16 kDa heat shock protein B,- none -,locus|B878_13670,*
glycyl-tRNA ligase subunit beta,NA,NA,-0.901687021,gi|444239767,glyS,ko:K01879,Glycyl-tRNA synthetase beta chain (EC 6.1.1.14),- none -,locus|B878_13680,*
alcohol dehydrogenase,NA,-1.176748877,-2.146429409,gi|444239775,yhdH,ko:K19745,Alcohol dehydrogenase (EC 1.1.1.1),Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_13720,*
3-ketoacyl-CoA thiolase,1.337546946,NA,NA,gi|444239776,fadA,ko:K00632,3-ketoacyl-CoA thiolase (EC 2.3.1.16),Acetyl-CoA fermentation to Butyrate;
Biotin biosynthesis;
Butanol Biosynthesis;
Butyrate metabolism cluster;
Isoleucine degradation;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle,locus|B878_13725,*
multifunctional fatty acid oxidation complex subunit alpha,NA,-2.102349962,NA,gi|444239777,fadB,ko:K01825,Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3),Acetyl-CoA fermentation to Butyrate;
Acetyl-CoA fermentation to Butyrate;
Acetyl-CoA fermentation to Butyrate;
Butanol Biosynthesis;
Butyrate metabolism cluster;
Butyrate metabolism cluster;
Isoleucine degradation;
Isoleucine degradation;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Valine degradation;
Valine degradation,locus|B878_13730,*
aspartyl-tRNA ligase,NA,NA,-0.577894173,gi|444239791,aspS,ko:K01876,Aspartyl-tRNA synthetase (EC 6.1.1.12),At5g37530 (CsdL protein family),locus|B878_13375,*
hypothetical protein B878_13405,NA,NA,-1.324990876,gi|444239797,PA1766,NA,FIG002781: Alpha-L-glutamate ligase family protein,- none -,locus|B878_13405,*
DNA topoisomerase I subunit omega,-0.696104422,NA,-1.692717232,gi|444239814,topA,ko:K03168,DNA topoisomerase I (EC 5.99.1.2),Conserved gene cluster associated with Met-tRNA formyltransferase,locus|B878_13490,*
3-phosphoshikimate 1-carboxyvinyltransferase,NA,0.430933752,0.468473563,gi|444239817,aroA,ko:K00800,5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) beta sub-homology division ## AroF beta,Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_13505,*
hypothetical protein B878_13510,NA,NA,0.785766494,gi|444239818,slyB,ko:K06077,FIG106692: Outer membrane lipoprotein,- none -,locus|B878_13510,*
50S ribosomal protein L9,NA,0.968746187,1.06652712,gi|444239829,rplI,ko:K02939,LSU ribosomal protein L9p,Ribosome LSU bacterial,locus|B878_13150,*
30S ribosomal protein S6,NA,0.78226609,1.022917362,gi|444239832,rpsF,ko:K02990,SSU ribosomal protein S6p,Ribosome SSU bacterial,locus|B878_13165,*
ribulose-phosphate 3-epimerase,NA,NA,-1.955560682,gi|444239833,rpe,ko:K01783,Ribulose-phosphate 3-epimerase (EC 5.1.3.1),Conserved gene cluster associated with Met-tRNA formyltransferase;
Pentose phosphate pathway,locus|B878_13170,*
3-dehydroquinate synthase,NA,-0.421054751,-1.506167762,gi|444239836,aroB,ko:K01735,3-dehydroquinate synthase (EC 4.2.3.4),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Shikimate kinase containing cluster;
Type IV pilus,locus|B878_13185,*
glutaredoxin,NA,NA,-0.946223526,gi|444239844,NA,NA,Peroxiredoxin family protein/glutaredoxin,- none -,locus|B878_13235,*
argininosuccinate synthase,NA,NA,1.09732161,gi|444239849,argG,ko:K01940,Argininosuccinate synthase (EC 6.3.4.5),Arginine Biosynthesis extended;
EC 6.3.4.- Ligases that form carbon-nitrogen bonds,locus|B878_13260,*
acetylglutamate kinase,NA,NA,0.943231244,gi|444239850,argB,ko:K00930,Acetylglutamate kinase (EC 2.7.2.8),Arginine Biosynthesis extended,locus|B878_13265,*
"5,10-methylenetetrahydrofolate reductase",NA,-0.459859784,-1.942771019,gi|444239855,metF,ko:K00297,"5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)",Methionine Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle,locus|B878_13290,*
bifunctional aspartate kinase II/homoserine dehydrogenase II,NA,-1.262485209,NA,gi|444239856,metL,ko:K12525,Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3),Lysine Biosynthesis DAP Pathway;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis,locus|B878_13295,*
cystathionine gamma-synthase,NA,-1.206704707,-1.369052379,gi|444239857,metB,ko:K01739,Cystathionine gamma-synthase (EC 2.5.1.48),L-Cystine Uptake and Metabolism;
Methionine Biosynthesis,locus|B878_13300,*
malate oxidoreductase,NA,0.460965212,0.65598584,gi|444239859,maeB,ko:K00029,NADP-dependent malic enzyme (EC 1.1.1.40),"Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_13310,*
bacterioferritin,NA,-1.603830628,-1.757953323,gi|444239860,bfr,ko:K03594,Bacterioferritin (EC 1.16.3.1),- none -,locus|B878_13315,*
"elongation factor Tu, partial",NA,1.327448259,NA,gi|444239862,tuf,ko:K02358,Translation elongation factor Tu,Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factors bacterial;
Universal GTPases,locus|B878_13325,*
hypothetical protein B878_12950,NA,-1.947224595,-3.814191324,gi|444239869,NA,NA,FIG01200565: hypothetical protein,- none -,locus|B878_12950,*
hypothetical protein B878_12960,NA,NA,-0.955652719,gi|444239871,ydjA,NA,Putative NAD(P)H nitroreductase YdjA,- none -,locus|B878_12960,*
glyceraldehyde-3-phosphate dehydrogenase A,NA,0.695558964,NA,gi|444239878,gapA,ko:K00134,NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12),Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Redox-dependent regulation of nucleus processes,locus|B878_12995,*
hypothetical protein B878_13000,NA,NA,-0.973384353,gi|444239879,NA,ko:K01792,Aldose 1-epimerase family protein YeaD,- none -,locus|B878_13000,*
hypothetical protein B878_13045,NA,-0.746257518,NA,gi|444239888,NA,ko:K01759,Lactoylglutathione lyase (EC 4.4.1.5),Glutathione: Non-redox reactions;
Methylglyoxal Metabolism,locus|B878_13045,*
glutamate decarboxylase,NA,-1.594092223,-0.96490375,gi|444239891,gadA,ko:K01580,Glutamate decarboxylase (EC 4.1.1.15),- none -,locus|B878_13060,*
hypothetical protein B878_13065,NA,-0.909463332,-1.798014799,gi|444239892,NA,ko:K07085,FIG01204208: hypothetical protein,- none -,locus|B878_13065,*
hypothetical protein B878_13095,NA,0.911878719,0.851375131,gi|444239898,NA,NA,RidA/YER057c/UK114 superfamily protein,- none -,locus|B878_13095,*
GMP synthase,NA,NA,-0.47195532,gi|444239917,guaA,ko:K01951,GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2),- none -,locus|B878_12780,*
inosine 5'-monophosphate dehydrogenase,NA,0.599646274,0.688733259,gi|444239918,guaB,ko:K00088,Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205),- none -,locus|B878_12785,*
GTP-binding protein Der,NA,NA,-1.937853474,gi|444239923,der,ko:K03977,GTP-binding protein EngA,CBSS-290633.1.peg.1906;
Universal GTPases,locus|B878_12810,*
outer membrane biogenesis protein BamB,-0.622147444,-0.474811484,-0.935229117,gi|444239924,bamB,ko:K17713,"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)",CBSS-290633.1.peg.1906;
Lipopolysaccharide assembly,locus|B878_12815,*
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase,NA,NA,1.270188034,gi|444239927,ispG,ko:K03526,1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1),Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis,locus|B878_12830,*
hypothetical protein B878_12860,NA,1.001500751,2.112386161,gi|444239933,fdx,ko:K04755,"Ferredoxin, 2Fe-2S",Soluble cytochromes and functionally related electron carriers,locus|B878_12860,*
chaperone protein HscA,NA,0.830321557,NA,gi|444239934,hscA,ko:K04044,Chaperone protein HscA,Protein chaperones,locus|B878_12865,*
hypothetical protein B878_12875,0.955484143,0.836128871,2.261129808,gi|444239936,iscA,ko:K13628,Iron binding protein IscA for iron-sulfur cluster assembly,- none -,locus|B878_12875,*
scaffold protein,0.870268922,1.479680394,2.099541559,gi|444239937,iscU,ko:K04488,Iron-sulfur cluster assembly scaffold protein IscU,tRNA modification Archaea,locus|B878_12880,*
cysteine desulfurase,NA,0.851400466,1.476023908,gi|444239938,iscS,ko:K04487,"Cysteine desulfurase (EC 2.8.1.7), IscS subfamily",Alanine biosynthesis;
At5g37530 (CsdL protein family);
Thiamin biosynthesis;
tRNA modification Archaea,locus|B878_12885,*
inositol monophosphate family protein,NA,0.847218726,NA,gi|444239941,suhB,ko:K01092,Inositol-1-monophosphatase (EC 3.1.3.25),- none -,locus|B878_12900,*
preprotein translocase subunit SecF,NA,-0.448689185,NA,gi|444239942,secF,ko:K03074,Protein-export membrane protein SecF (TC 3.A.5.1.1),- none -,locus|B878_12905,*
preprotein translocase subunit SecD,NA,NA,-0.8491692,gi|444239943,secD,ko:K03072,Protein-export membrane protein SecD (TC 3.A.5.1.1),- none -,locus|B878_12910,*
preprotein translocase subunit YajC,NA,-1.222880567,NA,gi|444239944,yajC,ko:K03210,Protein translocase subunit YajC,- none -,locus|B878_12915,*
acetoacetyl-CoA reductase,NA,NA,2.057045822,gi|444239987,phbB,ko:K00023,Acetoacetyl-CoA reductase (EC 1.1.1.36),Acetyl-CoA fermentation to Butyrate;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle,locus|B878_12695,*
acyltransferase,NA,NA,1.172237809,gi|444239988,NA,ko:K00626,Acetyl-CoA acetyltransferase (EC 2.3.1.9),Acetyl-CoA fermentation to Butyrate;
Butanol Biosynthesis;
Butyrate metabolism cluster;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle,locus|B878_12700,*
hypothetical protein B878_12705,NA,NA,2.546307382,gi|444239989,NA,NA,hypothetical protein,- none -,locus|B878_12705,*
polyhydroxyalkanoic acid synthase,-1.008217038,-2.672164696,NA,gi|444239990,phaC,ko:K03821,Polyhydroxyalkanoic acid synthase,Polyhydroxybutyrate metabolism,locus|B878_12710,*
hypothetical protein B878_12345,NA,0.525861888,1.212650903,gi|444239995,NA,NA,FIG01201640: hypothetical protein,- none -,locus|B878_12345,*
maltoporin,-0.626643399,-0.463068571,NA,gi|444239999,lamB,ko:K02024,"Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)",Maltose and Maltodextrin Utilization;
Trehalose Uptake and Utilization,locus|B878_12365,*
hypothetical protein B878_12370,-0.671704515,-0.417787843,NA,gi|444240000,VPA1643,ko:K05775,Maltose operon periplasmic protein MalM,Maltose and Maltodextrin Utilization,locus|B878_12370,*
pullulanase,NA,NA,0.835478126,gi|444240004,NA,ko:K01200,putative pullulanase precursor,- none -,locus|B878_12400,*
maltodextrin phosphorylase,-0.950120335,NA,-0.882803926,gi|444240017,malP,ko:K00688,Glycogen phosphorylase (EC 2.4.1.1),Glycogen metabolism;
Maltose and Maltodextrin Utilization,locus|B878_12465,*
4-alpha-glucanotransferase,-0.746905055,NA,-1.00105934,gi|444240018,malQ,ko:K00705,4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25),Glycogen metabolism;
Maltose and Maltodextrin Utilization,locus|B878_12470,*
glycogen branching enzyme,-1.045300692,NA,-0.887939384,gi|444240019,glgB,ko:K00700,"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)",Glycogen metabolism,locus|B878_12475,*
ubiquinone/menaquinone biosynthesis methyltransferase,NA,-0.423467344,NA,gi|444240070,NA,NA,SAM-dependent methyltransferase,- none -,locus|B878_11973,*
23S rRNA m(2)G2445 methyltransferase,NA,0.280236622,NA,gi|444240108,rlmL,ko:K12297,23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-),- none -,locus|B878_11763,*
dihydroorotate dehydrogenase 2,-1.172481268,NA,NA,gi|444240110,pyrD,ko:K00254,Dihydroorotate dehydrogenase (EC 1.3.3.1),De Novo Pyrimidine Synthesis,locus|B878_11773,*
carboxy-terminal protease,NA,NA,0.486403504,gi|444240115,prc,ko:K03797,Tail-specific protease precursor (EC 3.4.21.102),- none -,locus|B878_11798,*
nucleotide-binding protein,1.005096813,NA,NA,gi|444240126,yajQ,ko:K09767,UPF0234 protein Yitk,- none -,locus|B878_11853,*
hypothetical protein B878_11863,NA,NA,1.904270879,gi|444240128,aapJ,ko:K09969,Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4),- none -,locus|B878_11863,*
hypothetical protein B878_11568,-0.7934389,NA,NA,gi|444240147,NA,NA,hypothetical protein,- none -,locus|B878_11568,*
3-oxoacyl-ACP reductase,NA,-1.350373428,-1.863299036,gi|444240175,NA,ko:K00059,3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100),Fatty Acid Biosynthesis FASII,locus|B878_11718,*
3-hydroxyisobutyrate dehydrogenase,0.878210495,-0.884006724,NA,gi|444240195,mmsB,ko:K00020,3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31),Valine degradation,locus|B878_11393,*
enoyl-CoA hydratase/isomerase,NA,-1.200797568,NA,gi|444240196,NA,NA,Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17),Isoleucine degradation;
Valine degradation,locus|B878_11398,*
methylmalonate-semialdehyde dehydrogenase,NA,NA,-0.93245227,gi|444240199,mmsA,ko:K00140,Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27),Valine degradation,locus|B878_11413,*
acyl-CoA thiolase,1.66740383,-0.897785647,-1.395971527,gi|444240200,atoB,ko:K00626,3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16),Isoleucine degradation,locus|B878_11418,*
acetate kinase,NA,-0.638408829,NA,gi|444240214,ackA2,ko:K00925,Acetate kinase (EC 2.7.2.1),"Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_11498,*
ABC transporter substrate-binding protein,-2.308163066,-2.777107639,-1.531249683,gi|444240220,NA,ko:K02040,"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)",High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_11528,*
serine protease,NA,NA,-0.870083735,gi|444240282,hflK,ko:K04088,HflK protein,Hfl operon,locus|B878_10851,*
serine protease,NA,-0.332697603,-1.144483671,gi|444240283,hflC,ko:K04087,HflC protein,Hfl operon,locus|B878_10856,*
ribonuclease R,NA,-0.98648209,-2.116808282,gi|444240289,rnr,ko:K12573,3'-to-5' exoribonuclease RNase R,"RNA processing and degradation, bacterial",locus|B878_10886,*
tryptophanyl-tRNA ligase,0.737519675,0.693159829,NA,gi|444240292,trpS,ko:K01867,Tryptophanyl-tRNA synthetase (EC 6.1.1.2),"tRNA aminoacylation, Trp",locus|B878_10901,*
bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein,NA,NA,0.918759009,gi|444240296,argD,ko:K00821,"Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)",Arginine Biosynthesis extended;
Arginine and Ornithine Degradation;
Lysine Biosynthesis DAP Pathway,locus|B878_10921,*
succinylglutamic semialdehyde dehydrogenase,NA,-0.815656613,NA,gi|444240298,astD,ko:K06447,Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71),Arginine and Ornithine Degradation,locus|B878_10931,*
phosphoribulokinase,NA,NA,0.615159695,gi|444240301,prkB,ko:K00855,"Phosphoribulokinase homolog, function unknown",- none -,locus|B878_10946,*
30S ribosomal protein S7,NA,1.085777721,NA,gi|444240319,rpsG,ko:K02992,SSU ribosomal protein S7p (S5e),Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosome SSU bacterial,locus|B878_11036,*
"translation elongation factor Tu, partial",NA,0.554753576,0.573803758,gi|444240321,tuf,ko:K02358,NA,NA,NA,*
hypothetical protein B878_10662,NA,NA,1.416505478,gi|444240342,NA,NA,Putative S-transferase,- none -,locus|B878_10662,*
L-allo-threonine aldolase,NA,-0.558321025,NA,gi|444240344,ltaE,ko:K01620,Low-specificity L-threonine aldolase (EC 4.1.2.48),Glycine Biosynthesis;
Threonine degradation,locus|B878_10672,*
hypothetical protein B878_10372,NA,-0.900771633,-1.770410492,gi|444240372,yeaH,ko:K09786,FIG002076: hypothetical protein,- none -,locus|B878_10372,*
SpoVR family protein,NA,NA,-1.892195913,gi|444240373,ycgB,NA,Stage V sporulation protein involved in spore cortex synthesis (SpoVR),- none -,locus|B878_10377,*
"Lipoprotein YcfM, part of a salvage pathway of unknown substrate",NA,-0.538422326,-1.108192247,gi|444240390,lpoB,ko:K07337,"Lipoprotein YcfM, part of a salvage pathway of unknown substrate",- none -,locus|B878_10462,*
hypothetical protein B878_10487,0.751949172,0.58579304,1.603005831,gi|444240395,VV2376,NA,FIG01199829: hypothetical protein,- none -,locus|B878_10487,*
peroxiredoxin,2.06395766,2.02889345,1.8467124,gi|444240421,NA,NA,"Antioxidant, AhpC/Tsa family",- none -,locus|B878_10127,*
sugar ABC transporter periplasmic protein,-1.80554155,-5.579504719,-2.097917027,gi|444240442,ugpB,ko:K05813,"Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)",Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_10232,*
hypothetical protein B878_10247,NA,NA,1.25893696,gi|444240445,NA,NA,Universal stress protein family 8,- none -,locus|B878_10247,*
hypothetical protein B878_10327,NA,-0.848640159,NA,gi|444240461,cusF,NA,FIG01200120: hypothetical protein,- none -,locus|B878_10327,*
hypothetical protein B878_10342,-1.636055656,-1.722429084,-1.884040929,gi|444240462,cusB,ko:K07798,"Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family",Cobalt-zinc-cadmium resistance,locus|B878_10342,*
hypothetical protein B878_10347,-1.666682157,-1.712174801,-2.623277112,gi|444240463,NA,NA,"Heavy metal RND efflux outer membrane protein, CzcC family",Cobalt-zinc-cadmium resistance,locus|B878_10347,*
phosphoenolpyruvate synthase,-0.928224915,-1.065010461,-0.901756087,gi|444240502,ppsA,ko:K01007,Phosphoenolpyruvate synthase (EC 2.7.9.2),"Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_10032,*
dihydrolipoamide dehydrogenase,NA,0.449569449,0.622571183,gi|444240514,lpdA,ko:K00382,Glutathione reductase (EC 1.8.1.7),Glutathione: Redox cycle,locus|B878_09657,*
carbonic anhydrase,0.621118273,NA,0.452343605,gi|444240517,can,ko:K01673,Carbonic anhydrase (EC 4.2.1.1),Zinc regulated enzymes,locus|B878_09672,*
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase,NA,NA,-0.64405202,gi|444240532,acnB,ko:K01682,Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99),Glyoxylate bypass;
Methylcitrate cycle;
TCA Cycle,locus|B878_09747,*
hypothetical protein B878_09767,NA,NA,1.003640537,gi|444240536,fbpA,ko:K02012,"Ferric iron ABC transporter, iron-binding protein",Iron acquisition in Streptococcus;
Transport of Iron,locus|B878_09767,*
phosphoglycerate kinase,0.512417612,NA,-0.381932101,gi|444240555,pgk,ko:K00927,Phosphoglycerate kinase (EC 2.7.2.3),Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis,locus|B878_09397,*
ribose-5-phosphate isomerase A,NA,NA,-0.481906401,gi|444240563,rpiA,ko:K01807,Ribose 5-phosphate isomerase A (EC 5.3.1.6),D-ribose utilization;
Pentose phosphate pathway,locus|B878_09437,*
hypothetical protein B878_09452,NA,-1.060261286,NA,gi|444240566,VV2847,ko:K09895,FIG001590: Putative conserved exported protein precursor,CBSS-87626.3.peg.3639,locus|B878_09452,*
signal peptidase I,NA,NA,-0.599242022,gi|444240580,lepB,ko:K03100,Signal peptidase I (EC 3.4.21.89),CBSS-176299.4.peg.1292;
Signal peptidase,locus|B878_09522,*
ribonuclease III,NA,NA,0.664353679,gi|444240581,rnc,ko:K03685,Ribonuclease III (EC 3.1.26.3),"CBSS-176299.4.peg.1292;
RNA processing and degradation, bacterial",locus|B878_09527,*
enolase,NA,NA,-0.551053982,gi|444240591,eno,ko:K01689,Enolase (EC 4.2.1.11),Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis;
Serine-glyoxylate cycle,locus|B878_09577,*
"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase",NA,NA,1.525002486,gi|444240594,ispF,ko:K01770,"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)",Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis,locus|B878_09592,*
5'(3')-nucleotidase/polyphosphatase,NA,0.489695782,NA,gi|444240596,surE,ko:K03787,5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11),Housecleaning nucleoside triphosphate pyrophosphatases;
Phosphate metabolism,locus|B878_09602,*
alanyl-tRNA ligase,NA,NA,-1.52886296,gi|444240604,alaS,ko:K01872,Alanyl-tRNA synthetase (EC 6.1.1.7),"CBSS-257314.1.peg.488;
CBSS-281090.3.peg.464;
tRNA aminoacylation, Ala",locus|B878_09642,*
ABC amino acid transporter periplasmic ligand binding protein,NA,NA,4.131205441,gi|444240612,artI,ko:K09997,"Arginine ABC transporter, periplasmic arginine-binding protein ArtI",Arginine and Ornithine Degradation,locus|B878_09162,*
molybdenum cofactor biosynthesis protein B,NA,NA,1.0540619,gi|444240666,moaB,ko:K03638,Molybdenum cofactor biosynthesis protein MoaB,Molybdenum cofactor biosynthesis,locus|B878_08910,*
hypothetical protein B878_08930,NA,0.772560559,1.539072014,gi|444240670,oppA,ko:K15580,"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_08930,*
oligopeptide ABC transporter ATP-binding protein OppF,NA,0.523834459,0.904187651,gi|444240674,oppF,ko:K10823,Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1),ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_08950,*
ABC transporter substrate-binding protein,0.603326944,NA,-0.468470236,gi|444240679,NA,ko:K01989,ABC transporter substrate-binding protein,- none -,locus|B878_08975,*
sodium/proton antiporter,NA,NA,-0.85847217,gi|444240687,nhaB,ko:K03314,Na+/H+ antiporter NhaB,- none -,locus|B878_09015,*
fatty acid metabolism regulator,NA,-0.816500837,NA,gi|444240688,fadR,ko:K03603,"Transcriptional regulator for fatty acid degradation FadR, GntR superfamily",- none -,locus|B878_09020,*
AsmA protein,NA,-0.346075234,-1.366391145,gi|444240693,asmA,ko:K07289,AsmA protein,- none -,locus|B878_09045,*
ribonuclease E,NA,NA,-1.129075218,gi|444240697,rne,ko:K08300,Ribonuclease E (EC 3.1.26.12),"RNA processing and degradation, bacterial;
Ribosome biogenesis bacterial",locus|B878_09065,*
acyl carrier protein,NA,1.6493689,2.818919011,gi|444240707,acpP,ko:K02078,Acyl carrier protein,Fatty Acid Biosynthesis FASII;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_09115,*
3-oxoacyl-(acyl carrier protein) synthase II,NA,NA,-0.861460478,gi|444240708,fabF,ko:K09458,"3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)",- none -,locus|B878_09120,*
hypothetical protein B878_08580,NA,-0.617798619,-1.395448761,gi|444240717,NA,NA,FIG01203222: hypothetical protein,- none -,locus|B878_08580,*
lipase,NA,-0.71673754,-0.710346849,gi|444240718,NA,NA,putative lipase,- none -,locus|B878_08585,*
long-chain fatty acid transport protein,NA,-0.627875972,NA,gi|444240719,NA,ko:K06076,Long-chain fatty acid transport protein,- none -,locus|B878_08590,*
UDP-glucose 4-epimerase,1.036388534,0.781681619,NA,gi|444240739,galE,ko:K01784,UDP-glucose 4-epimerase (EC 5.1.3.2),Lactose and Galactose Uptake and Utilization;
N-linked Glycosylation in Bacteria,locus|B878_08710,*
hypothetical protein B878_08735,NA,-0.354962515,-0.532649753,gi|444240742,NA,NA,DamX-related protein,- none -,locus|B878_08735,*
glucosamine-6-phosphate deaminase,NA,-0.9127496,NA,gi|444240800,nagB,ko:K02564,Glucosamine-6-phosphate deaminase (EC 3.5.99.6),Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_08395,*
flagellin,NA,-1.603625408,NA,gi|444240829,flaB,ko:K02406,Flagellin protein FlaA,Flagellum;
Flagellum in Campylobacter,locus|B878_07930,*
Chemotaxis protein CheW,0.950566882,NA,3.389778147,gi|444240863,cheW,ko:K03408,Positive regulator of CheA protein activity (CheW),Bacterial Chemotaxis,locus|B878_08100,*
long-chain fatty acid transport protein,NA,-0.769339943,-1.122351526,gi|444240876,fadL-2,ko:K06076,Long-chain fatty acid transport protein,- none -,locus|B878_08165,*
hypothetical protein B878_07640,NA,-1.415479238,-1.806845621,gi|444240893,NA,ko:K12543,Agglutination protein,- none -,locus|B878_07640,*
hypothetical protein B878_07655,NA,-0.420293541,-0.706783645,gi|444240896,NA,ko:K12543,Agglutination protein,- none -,locus|B878_07655,*
methylcitrate synthase,NA,NA,-1.721724017,gi|444240912,prpC,ko:K01659,2-methylcitrate synthase (EC 2.3.3.5),Methylcitrate cycle,locus|B878_07735,*
tricarboxylic transport TctC,0.419941591,NA,NA,gi|444240919,VP1651,ko:K07795,Tricarboxylate transport protein TctC,Tricarboxylate transport cassette;
Tricarboxylate transport system,locus|B878_07770,*
hypothetical protein B878_07795,1.035493168,-0.796448873,NA,gi|444240924,NA,ko:K07080,"TRAP transporter solute receptor, TAXI family precursor",- none -,locus|B878_07795,*
NAD-dependent aldehyde dehydrogenase,NA,-1.206506234,NA,gi|444240925,NA,ko:K00138,Aldehyde dehydrogenase (EC 1.2.1.3),"Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Methylglyoxal Metabolism;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_07800,*
6-phosphogluconate dehydrogenase,NA,NA,-0.72497482,gi|444240928,gnd,ko:K00033,"6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)",Pentose phosphate pathway,locus|B878_07815,*
hypothetical protein B878_07820,0.71148479,NA,NA,gi|444240929,pgl,ko:K01057,"6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type",Entner-Doudoroff Pathway;
Pentose phosphate pathway,locus|B878_07820,*
hypothetical protein B878_07855,-0.904735542,-0.597935199,-0.775561948,gi|444240936,NA,NA,Outer membrane protein,- none -,locus|B878_07855,*
acetyl-CoA carboxylase biotin carboxylase subunit,NA,NA,-1.279996734,gi|444240956,accC,ko:K01961,Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14),EC 6.3.4.- Ligases that form carbon-nitrogen bonds;
Fatty Acid Biosynthesis FASII,locus|B878_07365,*
acetyl-CoA synthetase,NA,-1.06875841,NA,gi|444240959,acsA,ko:K01895,Acetyl-coenzyme A synthetase (EC 6.2.1.1),"Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_07380,*
sodium/solute symporter,NA,-2.36284297,NA,gi|444240967,actP,ko:K14393,Acetate permease ActP (cation/acetate symporter),"Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_07420,*
chaperonin GroEL,0.441310887,0.250345996,0.612708928,gi|444240984,groL,ko:K04077,Heat shock protein 60 kDa family chaperone GroEL,GroEL GroES,locus|B878_07505,*
elongation factor P,NA,0.580016154,NA,gi|444240989,efp,ko:K02356,Translation elongation factor P,Translation elongation factors bacterial,locus|B878_07530,*
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase,-1.237417834,NA,-1.379796304,gi|444241002,gpsA,ko:K00057,Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94),Glutaredoxin 3 containing cluster;
Glycerol and Glycerol-3-phosphate Uptake and Utilization;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_07595,*
serine hydroxymethyltransferase,-0.468409088,-0.673854405,-0.880458285,gi|444241030,glyA2,ko:K00600,Serine hydroxymethyltransferase (EC 2.1.2.1),Folate Biosynthesis;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis,locus|B878_07100,*
glycine cleavage system protein T2,NA,-0.69811533,-1.015250578,gi|444241032,gcvT,ko:K00605,Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10),CBSS-87626.3.peg.3639;
Glycine and Serine Utilization;
Glycine cleavage system,locus|B878_07110,*
ABC amino acid transporter periplasmic ligand binding protein,NA,0.545861532,1.216224773,gi|444241046,NA,ko:K02030,"Amino acid ABC transporter, periplasmic amino acid-binding protein",- none -,locus|B878_07180,*
iron-containing alcohol dehydrogenase,NA,NA,-1.630526285,gi|444241050,yqhD,ko:K08325,Iron-containing alcohol dehydrogenase,- none -,locus|B878_07200,*
xanthine-guanine phosphoribosyltransferase,NA,0.293313282,NA,gi|444241079,gpt,ko:K00769,Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) # Tet(34),- none -,locus|B878_06693,*
gamma-glutamyl phosphate reductase,NA,NA,-0.529541649,gi|444241082,proA,ko:K00147,Gamma-glutamyl phosphate reductase (EC 1.2.1.41),Proline Synthesis,locus|B878_06718,*
"3,4-dihydroxy-2-butanone 4-phosphate synthase",NA,NA,-1.062992934,gi|444241086,ribB,ko:K14652,"3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)","Folate Biosynthesis;
Molybdenum cofactor biosynthesis;
Riboflavin, FMN and FAD metabolism Extended;
Riboflavin, FMN and FAD metabolism Extended;
riboflavin to FAD",locus|B878_06738,*
"6,7-dimethyl-8-ribityllumazine synthase",NA,0.953095492,1.79008386,gi|444241087,ribH,ko:K00794,"6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)","Riboflavin, FMN and FAD metabolism Extended",locus|B878_06743,*
transcription antitermination protein NusB,NA,0.428594615,NA,gi|444241088,nusB,ko:K03625,Transcription termination protein NusB,Transcription factors bacterial,locus|B878_06748,*
tRNA s(4)U8 sulfurtransferase,-0.499439066,NA,NA,gi|444241096,thiI,ko:K03151,tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis,Thiamin biosynthesis;
Thiamin biosynthesis,locus|B878_06788,*
hypothetical protein B878_06823,NA,NA,-0.965375788,gi|444241103,ygdH,ko:K06966,Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase PpnN (EC 3.2.2.4) (EC 3.2.2.10),- none -,locus|B878_06823,*
7-cyano-7-deazaguanine reductase,NA,-0.542580637,-0.633585159,gi|444241106,queF,ko:K06879,NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13),- none -,locus|B878_06838,*
DL-methionine transporter substrate-binding subunit,NA,-0.483317361,-1.16262336,gi|444241111,metQ,ko:K02073,"Methionine ABC transporter, substrate-binding protein MetQ",Methionine Biosynthesis;
Methionine Degradation,locus|B878_06863,*
ABC transporter permease,NA,-0.49155522,-1.423208291,gi|444241112,metI,ko:K02072,Methionine ABC transporter permease protein,Methionine Biosynthesis;
Methionine Degradation,locus|B878_06868,*
DL-methionine transporter ATP-binding subunit,NA,-0.576419884,-1.37121548,gi|444241113,metN,ko:K02071,"Methionine ABC transporter, ATP-binding protein MetN",Methionine Biosynthesis;
Methionine Degradation,locus|B878_06873,*
serine hydroxymethyltransferase,0.427036147,0.341864347,NA,gi|444241119,glyA,ko:K00600,Serine hydroxymethyltransferase (EC 2.1.2.1),Folate Biosynthesis;
Glycine Biosynthesis;
Glycine and Serine Utilization;
Serine-glyoxylate cycle;
Serine Biosynthesis,locus|B878_06903,*
leucyl-tRNA ligase,NA,NA,-0.424732182,gi|444241131,leuS,ko:K01869,Leucyl-tRNA synthetase (EC 6.1.1.4),- none -,locus|B878_06963,*
hypothetical protein B878_06968,NA,-0.545545393,-0.878441479,gi|444241132,NA,NA,FIG002095: hypothetical protein,- none -,locus|B878_06968,*
hypothetical protein B878_06978,NA,0.648648867,2.01050579,gi|444241134,corC,ko:K06189,Magnesium and cobalt efflux protein CorC,CBSS-56780.10.peg.1536;
Copper homeostasis: copper tolerance;
Phosphate metabolism,locus|B878_06978,*
hypothetical protein B878_06556,NA,-0.980215901,-2.266871705,gi|444241177,VPA1096,NA,Polyketide synthase modules and related proteins,- none -,locus|B878_06556,*
D-ribose transporter subunit RbsB,0.819981533,NA,NA,gi|444241188,rbsB,ko:K10439,"Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)",D-ribose utilization,locus|B878_06611,*
asparaginyl-tRNA ligase,NA,NA,-0.898404911,gi|444241205,asnS,ko:K01893,Asparaginyl-tRNA synthetase (EC 6.1.1.22),tRNA modification Archaea,locus|B878_06008,*
hypothetical protein B878_06033,NA,NA,0.985120621,gi|444241210,NA,NA,FIG01199869: hypothetical protein,- none -,locus|B878_06033,*
choline/carnitine/betaine transporter,NA,-0.425539783,NA,gi|444241217,butA,ko:K03451,High-affinity choline uptake protein BetT,Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_06068,*
hypothetical protein B878_06108,NA,-1.398338785,-1.292362786,gi|444241223,NA,NA,"TRAP transporter solute receptor, unknown substrate 6",- none -,locus|B878_06108,*
hypothetical protein B878_06153,0.57731933,0.740828482,1.202268299,gi|444241232,icmP,ko:K07231,Iron-regulated protein A precursor,Transport of Iron,locus|B878_06153,*
ribonucleotide-diphosphate reductase subunit beta,NA,NA,1.215247236,gi|444241244,nrdB,ko:K00526,"Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)",Ribonucleotide reduction,locus|B878_06213,*
hypothetical protein B878_06233,NA,-1.056554722,-1.96597967,gi|444241248,NA,NA,Glycine cleavage system regulatory protein,- none -,locus|B878_06233,*
elongation factor P,0.829558917,NA,NA,gi|444241257,yeiP,ko:K02356,Translation elongation factor P-related protein,Translation elongation factors bacterial,locus|B878_06278,*
hypothetical protein B878_05689,-0.886175037,-0.761610923,-0.677261,gi|444241275,NA,NA,Unknown,- none -,locus|B878_05689,*
long-chain-fatty-acid--CoA ligase,NA,-1.253715278,-1.387981819,gi|444241280,NA,ko:K01897,Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3),Biotin biosynthesis,locus|B878_05724,*
hypothetical protein B878_05739,NA,-1.136981471,-0.942007878,gi|444241283,NA,NA,"P pilus assembly protein, chaperone PapD",- none -,locus|B878_05739,*
elongation factor G,NA,NA,-0.581875695,gi|444241286,fusA2,ko:K02355,Translation elongation factor G paralog VC2342,Translation elongation factor G family;
Translation elongation factors bacterial,locus|B878_05754,*
phosphoserine phosphatase,NA,0.530255919,NA,gi|444241289,serB,ko:K01079,Phosphoserine phosphatase (EC 3.1.3.3),Glycine and Serine Utilization;
Serine Biosynthesis,locus|B878_05769,*
phosphopentomutase,NA,-0.973795727,-1.983003221,gi|444241292,deoB,ko:K01839,Phosphopentomutase (EC 5.4.2.7),Deoxyribose and Deoxynucleoside Catabolism,locus|B878_05784,*
thymidine phosphorylase,NA,-1.786417837,-2.52090068,gi|444241293,deoA,ko:K00758,Thymidine phosphorylase (EC 2.4.2.4),Deoxyribose and Deoxynucleoside Catabolism;
pyrimidine conversions,locus|B878_05789,*
deoxyribose-phosphate aldolase,NA,-0.901372151,-1.133085903,gi|444241294,deoC,ko:K01619,Deoxyribose-phosphate aldolase (EC 4.1.2.4),Deoxyribose and Deoxynucleoside Catabolism,locus|B878_05794,*
hypothetical protein B878_05799,NA,0.563201943,NA,gi|444241295,NA,ko:K03317,Nucleoside permease NupC,Deoxyribose and Deoxynucleoside Catabolism;
Xanthine Metabolism in Bacteria,locus|B878_05799,*
lipoprotein NlpI,NA,-0.353136942,NA,gi|444241308,nlpI,ko:K05803,Lipoprotein nlpI precursor,- none -,locus|B878_05874,*
translation initiation factor IF-2,NA,NA,0.747147349,gi|444241313,infB,ko:K02519,Translation initiation factor 2,CBSS-138119.3.peg.2719;
NusA-TFII Cluster;
Universal GTPases,locus|B878_05899,*
transcription elongation factor NusA,NA,0.333187192,NA,gi|444241314,nusA,ko:K02600,Transcription termination protein NusA,NusA-TFII Cluster;
Transcription factors bacterial,locus|B878_05904,*
hypothetical protein B878_05929,NA,NA,-0.627217057,gi|444241319,ftsH,ko:K03798,Cell division protein FtsH (EC 3.4.24.-),Bacterial Cell Division;
Cell division-ribosomal stress proteins cluster,locus|B878_05929,*
hypothetical protein B878_05939,NA,NA,0.820792079,gi|444241321,yhbY,ko:K07574,FIG004454: RNA binding protein,- none -,locus|B878_05939,*
transcription elongation factor GreA,NA,NA,0.86579424,gi|444241322,greA,ko:K03624,Transcription elongation factor GreA,Transcription factors bacterial,locus|B878_05944,*
tyrosyl-tRNA ligase,NA,NA,-0.806718964,gi|444241327,tyrS,ko:K01866,Tyrosyl-tRNA synthetase (EC 6.1.1.1),- none -,locus|B878_05969,*
iron-sulfur cluster insertion protein ErpA,NA,NA,1.199777578,gi|444241331,erpA,ko:K15724,probable iron binding protein from the HesB_IscA_SufA family,- none -,locus|B878_05989,*
"glutamate-1-semialdehyde aminotransferase, partial",NA,NA,-1.161448011,gi|444241332,hemL,ko:K01845,NA,NA,NA,*
"tryptophanase/L-cysteine desulfhydrase, PLP-dependent",NA,0.503086309,0.679765515,gi|444241352,tnaA,ko:K01667,Tryptophanase (EC 4.1.99.1),Aromatic amino acid degradation,locus|B878_05402,*
hypothetical protein B878_05432,0.688659549,NA,NA,gi|444241358,NA,ko:K07080,"TRAP transporter solute receptor, TAXI family precursor",- none -,locus|B878_05432,*
dihydroxynaphthoic acid synthetase,NA,-1.925578204,NA,gi|444241504,menB,ko:K01661,Naphthoate synthase (EC 4.1.3.36),"Menaquinone and Phylloquinone Biosynthesis;
Menaquinone biosynthesis from chorismate via 1,4-dihydroxy-2-naphthoate",locus|B878_04701,*
peptidyl-prolyl cis-trans isomerase D,NA,0.510764355,NA,gi|444241514,ppiD,ko:K03770,Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8),- none -,locus|B878_04751,*
DNA-binding protein HU-beta,NA,NA,-0.981801792,gi|444241515,hupB,ko:K03530,DNA-binding protein HU-beta,"DNA structural proteins, bacterial",locus|B878_04756,*
ATP-dependent protease LA,NA,NA,-0.758751759,gi|444241516,lon,ko:K01338,ATP-dependent protease La (EC 3.4.21.53) Type I,"Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent",locus|B878_04761,*
ATP-dependent protease ATP-binding subunit ClpX,NA,-0.563940081,-1.119790061,gi|444241517,clpX,ko:K03544,ATP-dependent Clp protease ATP-binding subunit ClpX,"Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent",locus|B878_04766,*
ATP-dependent Clp protease proteolytic subunit,NA,NA,1.178462442,gi|444241518,clpP,ko:K01358,ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92),"Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent;
cAMP signaling in bacteria",locus|B878_04771,*
TRAP-type C4-dicarboxylate transport system component,0.602621395,-0.407523042,0.857257985,gi|444241526,dctP,ko:K11688,"TRAP-type C4-dicarboxylate transport system, periplasmic component",CBSS-49338.1.peg.459,locus|B878_04811,*
"bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase",NA,0.490886302,NA,gi|444241546,folD,ko:K01491,Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9),Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle,locus|B878_04911,*
3-hydroxyisobutyrate dehydrogenase,NA,NA,-0.685114743,gi|444241559,NA,ko:K00020,2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60),"D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism",locus|B878_04221,*
maltose/maltodextrin transporter ATP-binding protein,-0.583785886,0.428305478,NA,gi|444241582,malK,ko:K10111,Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19),Maltose and Maltodextrin Utilization,locus|B878_04346,*
maltose ABC transporter periplasmic protein,NA,0.425999463,0.854761082,gi|444241584,malE,ko:K10108,"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE",Alpha-Amylase locus in Streptocococcus;
Bacterial Chemotaxis;
Maltose and Maltodextrin Utilization,locus|B878_04356,*
maltose transporter membrane protein,NA,-0.391840975,-0.842976485,gi|444241585,malF,ko:K10109,"Maltose/maltodextrin ABC transporter, permease protein MalF",Maltose and Maltodextrin Utilization,locus|B878_04361,*
maltose transporter permease,-1.252662666,NA,-1.313522002,gi|444241586,malG,ko:K10110,"Maltose/maltodextrin ABC transporter, permease protein MalG",Maltose and Maltodextrin Utilization,locus|B878_04366,*
NAD synthetase,NA,NA,0.622689548,gi|444241596,nadE,ko:K01916,NAD synthetase (EC 6.3.1.5),NAD and NADP cofactor biosynthesis global,locus|B878_04416,*
hypothetical protein B878_04456,NA,NA,-0.986204061,gi|444241604,luxT,NA,Transcriptional regulator LuxT,- none -,locus|B878_04456,*
alpha-amylase,NA,NA,-1.220845616,gi|444241617,NA,ko:K01176,Glycosidase,- none -,locus|B878_04521,*
hypothetical protein B878_04541,NA,NA,0.980100978,gi|444241621,NA,NA,"Transcriptional regulator, ArsR family",- none -,locus|B878_04541,*
hypothetical protein B878_04156,NA,0.77303953,1.855821951,gi|444241716,opuAC,ko:K02002,putative periplasmic substrate-binding protein,- none -,locus|B878_04156,*
acetyl-CoA carboxylase carboxyltransferase subunit alpha,NA,0.562900813,NA,gi|444241727,accA,ko:K01962,Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2),EC 6.4.1.- Ligases that form carbon-carbon bonds;
Fatty Acid Biosynthesis FASII,locus|B878_03311,*
UDP-N-acetylglucosamine acyltransferase,NA,0.424696999,0.613414857,gi|444241731,lpxA,ko:K00677,Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129),- none -,locus|B878_03331,*
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase,NA,NA,-0.609125942,gi|444241733,lpxD,ko:K02536,UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-),- none -,locus|B878_03341,*
outer membrane protein OmpH,NA,NA,0.662887656,gi|444241734,skp,ko:K06142,Outer membrane protein H precursor,Periplasmic Stress Response,locus|B878_03346,*
ribosome recycling factor,NA,NA,0.733522372,gi|444241740,frr,ko:K02838,Ribosome recycling factor,Translation termination factors bacterial,locus|B878_03376,*
30S ribosomal protein S2,NA,0.693589331,NA,gi|444241743,rpsB,ko:K02967,SSU ribosomal protein S2p (SAe),CBSS-312309.3.peg.1965;
Ribosome SSU bacterial,locus|B878_03391,*
methionine aminopeptidase,1.570985743,NA,NA,gi|444241744,map,ko:K01265,Methionine aminopeptidase (EC 3.4.11.18),CBSS-312309.3.peg.1965;
EC 3.4.11.- Aminopeptidases;
Translation termination factors bacterial,locus|B878_03396,*
Na(+)-translocating NADH-quinone reductase subunit C,-0.45544033,-0.321616051,-0.759531704,gi|444241774,nqrC,ko:K00348,Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-),Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes,locus|B878_03546,*
3-phosphoserine/phosphohydroxythreonine aminotransferase,NA,0.463751518,0.665742443,gi|444241813,serC,ko:K00831,Phosphoserine aminotransferase (EC 2.6.1.52),Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis,locus|B878_02891,*
hypothetical protein B878_02911,NA,-0.414997619,-1.216946119,gi|444241817,NA,NA,FIG01199724: hypothetical protein,- none -,locus|B878_02911,*
hypothetical protein B878_02931,NA,NA,0.826106204,gi|444241821,VC1150,NA,FIG01199945: hypothetical protein,- none -,locus|B878_02931,*
glutaredoxin 1,0.822373632,0.699995372,0.925701068,gi|444241825,grxA,ko:K03674,Glutaredoxin 1,Glutaredoxins;
Glutathione: Redox cycle,locus|B878_02951,*
trans-2-enoyl-CoA reductase,NA,NA,-0.66907447,gi|444241827,fabV,ko:K00209,Enoyl-[acyl-carrier-protein] reductase (NADH) FabV (EC 1.3.1.9) => refractory to triclosan @ trans-2-enoyl-CoA reductase (NAD(+)) (EC 1.3.1.44),- none -,locus|B878_02961,*
hypothetical protein B878_03036,NA,NA,1.148812192,gi|444241842,NA,ko:K02483,Two-component system response regulator QseB,Orphan regulatory proteins,locus|B878_03036,*
50S ribosomal protein L25,NA,1.022526918,1.106905449,gi|444241846,rplY,ko:K02897,LSU ribosomal protein L25p,Ribosome LSU bacterial,locus|B878_03056,*
bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor,NA,-2.794110111,-2.05547946,gi|444241849,NA,ko:K11751,UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5),pyrimidine conversions,locus|B878_03071,*
hypothetical protein B878_03211,NA,-0.430652743,-1.449274791,gi|444241875,NA,NA,Acriflavin resistance protein,Multidrug Resistance Efflux Pumps,locus|B878_03211,*
hypothetical protein B878_03216,NA,-0.626316837,-1.260368383,gi|444241876,NA,NA,Probable Co/Zn/Cd efflux system membrane fusion protein,Cobalt-zinc-cadmium resistance,locus|B878_03216,*
ubiquinone/menaquinone biosynthesis methyltransferase,-0.894558891,NA,NA,gi|444241895,ubiE,ko:K03183,"2-methoxy-6-polyprenyl-1,4-benzoquinol methylase (EC 2.1.1.201) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163)",Menaquinone and Phylloquinone Biosynthesis;
Ubiquinone Biosynthesis;
Ubiquinone biosynthesis -- gjo,locus|B878_02466,*
twin arginine translocase protein A,NA,-0.680751989,-0.556501674,gi|444241898,tatA,ko:K03116,Twin-arginine translocation protein TatA,Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related;
Twin-arginine translocation system,locus|B878_02481,*
delta-aminolevulinic acid dehydratase,NA,-0.62174222,NA,gi|444241902,hemB,ko:K01698,Porphobilinogen synthase (EC 4.2.1.24),Zinc regulated enzymes,locus|B878_02501,*
DNA polymerase I,NA,NA,-0.565816016,gi|444241904,polA,ko:K02335,DNA polymerase I (EC 2.7.7.7),DNA-replication;
DNA Repair Base Excision,locus|B878_02511,*
cytochrome c553,NA,-0.595938308,-0.849427665,gi|444241906,cc4,NA,Cytochrome c4,Soluble cytochromes and functionally related electron carriers,locus|B878_02521,*
Der GTPase activator,NA,0.90945905,1.905562636,gi|444241909,yihI,ko:K09894,Protein of unknown function DUF414,- none -,locus|B878_02536,*
glutamine synthetase,NA,0.558332449,1.209365703,gi|444241917,glnA,ko:K01915,Glutamine synthetase type I (EC 6.3.1.2),"Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Glutamine synthetases;
Peptidoglycan Biosynthesis",locus|B878_02576,*
GTPase,NA,0.373525736,-0.869736709,gi|444241919,typA,ko:K06207,GTP-binding protein TypA/BipA,Universal GTPases,locus|B878_02586,*
hypothetical protein B878_02601,NA,-0.707845793,-1.555487033,gi|444241922,rbn,ko:K07058,"Inner membrane protein YihY, formerly thought to be RNase BN",- none -,locus|B878_02601,*
phosphoenolpyruvate carboxykinase,NA,-1.426788275,-1.152716674,gi|444241926,pckA,ko:K01610,Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49),"Pyruvate metabolism I: anaplerotic reactions, PEP;
Serine-glyoxylate cycle",locus|B878_02621,*
Hsp33-like chaperonin,NA,-0.50751454,-1.134200798,gi|444241927,hslO,ko:K04083,33 kDa chaperonin (Heat shock protein 33) (HSP33),- none -,locus|B878_02626,*
general secretion pathway protein D,NA,-0.38765705,-0.571302819,gi|444241930,gspD,ko:K02453,General secretion pathway protein D,General Secretion Pathway,locus|B878_02641,*
TolQ proton channel protein,NA,NA,2.274700844,gi|444241963,NA,ko:K03561,MotA/TolQ/ExbB proton channel family protein,Ton and Tol transport systems,locus|B878_02806,*
hypothetical protein B878_02816,NA,NA,1.778475739,gi|444241965,NA,ko:K02014,TonB-dependent receptor,Ton and Tol transport systems,locus|B878_02816,*
ABC oligopeptide transporter periplasmic component,NA,0.423192801,1.92917837,gi|444241968,NA,ko:K13893,"ABC-type oligopeptide transport system, periplasmic component",- none -,locus|B878_02831,*
tRNA-specific 2-thiouridylase MnmA,0.71643104,NA,NA,gi|444241978,mnmA,ko:K00566,tRNA-specific 2-thiouridylase MnmA,At5g37530 (CsdL protein family),locus|B878_01981,*
seryl-tRNA ligase,NA,NA,0.374785664,gi|444241997,serS,ko:K01875,Seryl-tRNA synthetase (EC 6.1.1.11),"Glycine and Serine Utilization;
tRNA aminoacylation, Ser",locus|B878_02076,*
lipoprotein chaperone,NA,NA,1.158476987,gi|444241999,lolA,ko:K03634,Outer membrane lipoprotein carrier protein LolA,Lipopolysaccharide assembly;
Lipoprotein sorting system,locus|B878_02086,*
leucine-responsive transcriptional regulator,NA,0.850595969,0.789995119,gi|444242001,lrp,ko:K03719,"Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system","Branched-Chain Amino Acid Biosynthesis;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_02096,*
alanine dehydrogenase,NA,0.508250247,1.084223733,gi|444242002,ald,ko:K00259,Alanine dehydrogenase (EC 1.4.1.1),Pyruvate Alanine Serine Interconversions,locus|B878_02101,*
transcriptional regulator CysB,NA,-0.778930198,NA,gi|444242004,cysB,ko:K13634,Cys regulon transcriptional activator CysB,"Cysteine Biosynthesis;
DNA-binding regulatory proteins, strays",locus|B878_02111,*
"glutamate synthase, large subunit",NA,NA,1.961543744,gi|444242077,gltB,ko:K00265,Glutamate synthase [NADPH] large chain (EC 1.4.1.13),"Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_01524,*
carbamoyl phosphate synthase large subunit,NA,NA,-0.907493746,gi|444242088,carB,ko:K01955,Carbamoyl-phosphate synthase large chain (EC 6.3.5.5),De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon,locus|B878_01579,*
dihydrodipicolinate reductase,NA,NA,0.622816642,gi|444242090,dapB,ko:K00215,4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8),Lysine Biosynthesis DAP Pathway,locus|B878_01589,*
preprotein translocase subunit SecA,NA,NA,-1.120921636,gi|444242092,secA,ko:K03070,Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1),- none -,locus|B878_01599,*
cell division protein FtsA,NA,NA,-0.533199733,gi|444242096,ftsA,ko:K03590,Cell division protein FtsA,Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ,locus|B878_01619,*
"ubiquinol--cytochrome c reductase, cytochrome c1",NA,NA,-0.737759796,gi|444242116,petC,ko:K00413,"ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit",Ubiquinone Menaquinone-cytochrome c reductase complexes,locus|B878_01719,*
"ubiquinol-cytochrome c reductase, iron-sulfur subunit",NA,-0.319675826,-0.684596906,gi|444242118,petA,ko:K00411,Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2),Ubiquinone Menaquinone-cytochrome c reductase complexes,locus|B878_01729,*
30S ribosomal protein S9,NA,0.954838343,NA,gi|444242119,rpsI,ko:K02996,SSU ribosomal protein S9p (S16e),Ribosome SSU bacterial,locus|B878_01734,*
50S ribosomal protein L13,NA,1.10172912,NA,gi|444242120,rplM,ko:K02871,LSU ribosomal protein L13p (L13Ae),Ribosome LSU bacterial,locus|B878_01739,*
protease,NA,-0.442738757,NA,gi|444242123,degS,ko:K04691,Outer membrane stress sensor protease DegS,"Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent",locus|B878_01764,*
outer membrane channel protein,NA,-0.495514514,-0.874770809,gi|444242131,tolC,ko:K12340,"Type I secretion outer membrane protein, TolC precursor",Multidrug Resistance Efflux Pumps;
Ton and Tol transport systems,locus|B878_01804,*
arylsulfatase,NA,NA,1.844026709,gi|444242138,htrG,ko:K07184,Arylsulfatase (EC 3.1.6.1),Alkanesulfonate assimilation;
Galactosylceramide and Sulfatide metabolism,locus|B878_01849,*
SSU ribosomal protein S21p,1.068118015,2.02624651,0.793642018,gi|444242148,rpsU,ko:K02970,SSU ribosomal protein S21p,Macromolecular synthesis operon;
Ribosome SSU bacterial,locus|B878_01899,*
hypothetical protein B878_01924,NA,-1.25468893,-2.029232109,gi|444242153,NA,ko:K09797,PUTATIVE PERIPLASMIC PROTEIN,- none -,locus|B878_01924,*
nucleotide sugar dehydrogenase,NA,NA,-1.124354298,gi|444242165,ugd,ko:K00012,UDP-glucose dehydrogenase (EC 1.1.1.22),Streptococcal Hyaluronic Acid Capsule,locus|B878_00879,*
UTP-glucose-1-phosphate uridylyltransferase,NA,NA,1.191802341,gi|444242166,NA,ko:K00963,UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9),Streptococcal Hyaluronic Acid Capsule,locus|B878_00884,*
ribonuclease activity regulator protein RraA,NA,-0.84261024,-0.711957291,gi|444242176,rraA,ko:K02553,Ribonuclease E inhibitor RraA,"RNA processing and degradation, bacterial",locus|B878_00934,*
ATP-dependent protease ATP-binding subunit HslU,0.890491081,NA,NA,gi|444242178,hslU,ko:K03667,ATP-dependent hsl protease ATP-binding subunit HslU,"Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent",locus|B878_00944,*
30S ribosomal protein S10,NA,1.967332576,NA,gi|444242184,rpsJ,ko:K02946,SSU ribosomal protein S10p (S20e),Ribosome SSU bacterial,locus|B878_00974,*
50S ribosomal protein L3,NA,1.410640787,NA,gi|444242185,rplC,ko:K02906,LSU ribosomal protein L3p (L3e),Ribosome LSU bacterial,locus|B878_00979,*
50S ribosomal protein L4,NA,1.507281486,NA,gi|444242186,rplD,ko:K02926,LSU ribosomal protein L4p (L1e),Ribosome LSU bacterial,locus|B878_00984,*
50S ribosomal protein L23,NA,1.397304633,0.913910193,gi|444242187,rplW,ko:K02892,LSU ribosomal protein L23p (L23Ae),Ribosome LSU bacterial,locus|B878_00989,*
50S ribosomal protein L2,NA,0.901028204,NA,gi|444242188,rplB,ko:K02886,LSU ribosomal protein L2p (L8e),Ribosome LSU bacterial,locus|B878_00994,*
30S ribosomal protein S19,NA,1.417397178,NA,gi|444242189,rpsS,ko:K02965,SSU ribosomal protein S19p (S15e),Ribosome SSU bacterial,locus|B878_00999,*
50S ribosomal protein L22,NA,1.248163486,0.997664697,gi|444242190,rplV,ko:K02890,LSU ribosomal protein L22p (L17e),Ribosome LSU bacterial,locus|B878_01004,*
30S ribosomal protein S3,NA,0.358337137,NA,gi|444242191,rpsC,ko:K02982,SSU ribosomal protein S3p (S3e),Ribosome SSU bacterial,locus|B878_01009,*
LSU ribosomal protein L16p (L10e),NA,0.787353507,NA,gi|444242192,rplP,ko:K02878,LSU ribosomal protein L16p (L10e),Ribosome LSU bacterial,locus|B878_01014,*
50S ribosomal protein L29,NA,1.255174019,NA,gi|444242193,rpmC,ko:K02904,LSU ribosomal protein L29p (L35e),Ribosome LSU bacterial,locus|B878_01019,*
30S ribosomal protein S17,NA,1.350750154,NA,gi|444242194,rpsQ,ko:K02961,SSU ribosomal protein S17p (S11e),Ribosome SSU bacterial,locus|B878_01024,*
50S ribosomal protein L14,NA,0.639478496,0.477856957,gi|444242195,rplN,ko:K02874,LSU ribosomal protein L14p (L23e),Ribosome LSU bacterial,locus|B878_01029,*
50S ribosomal protein L24,NA,1.094843677,0.948468733,gi|444242196,rplX,ko:K02895,LSU ribosomal protein L24p (L26e),Ribosome LSU bacterial,locus|B878_01034,*
50S ribosomal protein L5,NA,0.635406011,NA,gi|444242197,rplE,ko:K02931,LSU ribosomal protein L5p (L11e),Ribosome LSU bacterial,locus|B878_01039,*
30S ribosomal protein S14,NA,0.788463433,NA,gi|444242198,rpsN,ko:K02954,"SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent",Ribosome SSU bacterial,locus|B878_01044,*
30S ribosomal protein S8,NA,1.038639217,1.730447929,gi|444242199,rpsH,ko:K02994,SSU ribosomal protein S8p (S15Ae),Ribosome SSU bacterial,locus|B878_01049,*
50S ribosomal protein L6,NA,1.388405376,0.614475937,gi|444242200,rplF,ko:K02933,LSU ribosomal protein L6p (L9e),Ribosome LSU bacterial,locus|B878_01054,*
50S ribosomal protein L18,NA,1.307377208,NA,gi|444242201,rplR,ko:K02881,LSU ribosomal protein L18p (L5e),Ribosome LSU bacterial,locus|B878_01059,*
30S ribosomal protein S5,NA,1.348170074,NA,gi|444242202,rpsE,ko:K02988,SSU ribosomal protein S5p (S2e),Ribosomal protein S5p acylation;
Ribosome SSU bacterial,locus|B878_01064,*
50S ribosomal protein L15,NA,1.227363733,1.407764495,gi|444242204,rplO,ko:K02876,LSU ribosomal protein L15p (L27Ae),Ribosome LSU bacterial,locus|B878_01074,*
30S ribosomal protein S13,NA,1.177859609,1.357671588,gi|444242207,rpsM,ko:K02952,SSU ribosomal protein S13p (S18e),Ribosome SSU bacterial,locus|B878_01089,*
SSU ribosomal protein S11p (S14e),NA,0.608440774,NA,gi|444242208,rpsK,ko:K02948,SSU ribosomal protein S11p (S14e),Ribosome SSU bacterial,locus|B878_01094,*
30S ribosomal protein S4,NA,1.155374732,0.962027206,gi|444242209,rpsD,ko:K02986,"SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc-independent",Ribosome SSU bacterial,locus|B878_01099,*
DNA-directed RNA polymerase subunit alpha,NA,0.554563146,NA,gi|444242210,rpoA,ko:K03040,DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6),RNA polymerase bacterial,locus|B878_01104,*
50S ribosomal protein L17,NA,1.33268665,1.065401593,gi|444242211,rplQ,ko:K02879,LSU ribosomal protein L17p,Ribosome LSU bacterial,locus|B878_01109,*
FKBP-type peptidylprolyl isomerase,NA,NA,1.372735612,gi|444242213,fklB,ko:K03773,FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8),- none -,locus|B878_01119,*
sulfate adenylyltransferase subunit 2,NA,-0.486729851,NA,gi|444242221,cysD,ko:K00957,Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_01179,*
sulfate adenylyltransferase subunit 1,NA,-0.762327549,NA,gi|444242222,cysN,ko:K00956,Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_01184,*
hypothetical protein B878_01219,1.56699198,1.374801138,2.072601265,gi|444242229,NA,NA,Predicted zinc-binding protein,- none -,locus|B878_01219,*
hypothetical protein B878_01229,0.573771475,NA,2.253596761,gi|444242231,ytfJ,ko:K07109,Protein ytfJ precursor,- none -,locus|B878_01229,*
inorganic pyrophosphatase,NA,0.576066385,1.124099072,gi|444242238,ppa,ko:K01507,Inorganic pyrophosphatase (EC 3.6.1.1),Phosphate metabolism,locus|B878_01264,*
hypothetical protein B878_01309,NA,NA,0.849984853,gi|444242247,NA,ko:K07080,"TRAP transporter solute receptor, TAXI family",- none -,locus|B878_01309,*
arginine repressor,NA,NA,0.802357433,gi|444242248,argR,ko:K03402,"Arginine pathway regulatory protein ArgR, repressor of arg regulon",Arginine Biosynthesis extended;
Arginine Deiminase Pathway;
Arginine and Ornithine Degradation,locus|B878_01314,*
malate dehydrogenase,NA,NA,0.494014965,gi|444242249,mdh,ko:K00024,Malate dehydrogenase (EC 1.1.1.37),Glyoxylate bypass;
Serine-glyoxylate cycle;
TCA Cycle,locus|B878_01319,*
50S ribosomal protein L21,NA,1.578809501,1.654071286,gi|444242252,rplU,ko:K02888,LSU ribosomal protein L21p,CBSS-176279.3.peg.868;
Ribosome LSU bacterial,locus|B878_01334,*
50S ribosomal protein L27,NA,1.191118208,0.975503085,gi|444242253,rpmA,ko:K02899,LSU ribosomal protein L27p,CBSS-176279.3.peg.868;
Ribosome LSU bacterial,locus|B878_01339,*
GTPase CgtA,NA,NA,-1.204756568,gi|444242254,obg,ko:K03979,GTP-binding protein Obg,CBSS-176279.3.peg.868;
Universal GTPases,locus|B878_01344,*
4-hydroxythreonine-4-phosphate dehydrogenase,NA,NA,-0.653802904,gi|444242261,pdxA,ko:K00097,4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262),EC49-61;
Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_01379,*
hypothetical protein B878_01384,NA,NA,0.58471185,gi|444242262,surA,ko:K03771,Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8),EC49-61;
Lipopolysaccharide assembly;
Peptidyl-prolyl cis-trans isomerase;
Periplasmic Stress Response,locus|B878_01384,*
LPS assembly outer membrane complex protein LptD,NA,-0.288165705,NA,gi|444242263,lptD,ko:K04744,"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor",EC49-61;
Lipopolysaccharide assembly,locus|B878_01389,*
3-isopropylmalate dehydrogenase,0.485846747,NA,1.050042575,gi|444242268,leuB,ko:K00052,3-isopropylmalate dehydrogenase (EC 1.1.1.85),Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis,locus|B878_01414,*
2-isopropylmalate synthase,NA,NA,-0.890386111,gi|444242269,leuA,ko:K01649,2-isopropylmalate synthase (EC 2.3.3.13),Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis,locus|B878_01419,*
acetolactate synthase 3 catalytic subunit,NA,NA,-1.568267196,gi|444242275,ilvI,ko:K01652,Acetolactate synthase large subunit (EC 2.2.1.6),Branched-Chain Amino Acid Biosynthesis,locus|B878_01449,*
acetolactate synthase 3 regulatory subunit,NA,NA,-1.140478094,gi|444242276,ilvH,ko:K01653,Acetolactate synthase small subunit (EC 2.2.1.6),Branched-Chain Amino Acid Biosynthesis,locus|B878_01454,*
pyruvate kinase,-0.452334671,NA,NA,gi|444242279,pykF,ko:K00873,Pyruvate kinase (EC 2.7.1.40),"Entner-Doudoroff Pathway;
Glycerate metabolism;
Glycolysis and Gluconeogenesis;
Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_01469,*
glucosamine--fructose-6-phosphate aminotransferase,-0.778379556,-0.506169277,-0.829022302,gi|444242281,glmS,ko:K00820,Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16),Sialic Acid Metabolism;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_01479,*
succinylglutamate desuccinylase,NA,-0.590526517,-0.553329292,gi|444242296,astE,ko:K05526,Succinylglutamate desuccinylase (EC 3.5.1.96),Arginine and Ornithine Degradation,locus|B878_00070,*
4-hydroxyphenylpyruvate dioxygenase,NA,NA,-2.529996967,gi|444242324,hppD,ko:K00457,4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27),Aromatic amino acid degradation;
Homogentisate pathway of aromatic compound degradation,locus|B878_00210,*
N-acetyl-D-glucosamine kinase,NA,-0.949087988,-1.395665601,gi|444242397,nagK,ko:K00884,ROK family protein,- none -,locus|B878_00575,*
cbb3-type cytochrome c oxidase subunit II,NA,-0.42424056,-0.592417273,gi|444242438,ccoO,ko:K00405,Cytochrome c oxidase subunit CcoO (EC 1.9.3.1),Terminal cytochrome C oxidases,locus|B878_00790,*
hypothetical protein B878_24400,NA,-0.312870503,-0.818119547,gi|444237519,NA,NA,NA,NA,NA,*
aldehyde dehydrogenase,NA,-1.581130015,-2.044842519,gi|444238162,calB,ko:K00154,Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68),"Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Methylglyoxal Metabolism;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_21493,
Dca,NA,NA,1.89736763,gi|444238294,NA,ko:K19353,Dca,- none -,locus|B878_20800,
threonine dehydratase,2.045431935,NA,NA,gi|444238319,ilvA,ko:K01754,Threonine dehydratase biosynthetic (EC 4.3.1.19),Branched-Chain Amino Acid Biosynthesis,locus|B878_20745,
coproporphyrinogen III oxidase,NA,-0.812977723,NA,gi|444238351,hemF,ko:K00228,"Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)",- none -,locus|B878_20550,
hypothetical protein B878_17045,NA,-1.621149778,-1.536975281,gi|444239095,NA,NA,FIG01202349: hypothetical protein,- none -,locus|B878_17045,
"hypothetical protein B878_16455, partial",NA,NA,-5.663231155,gi|444239216,NA,NA,HD-domain protein,- none -,locus|B878_16455,
hypothetical protein B878_12610,NA,3.26019986,NA,gi|444239970,NA,ko:K09802,UPF0265 protein YeeX,Broadly distributed proteins not in subsystems,locus|B878_12610,
hypothetical protein B878_12185,NA,NA,1.862416676,gi|444240031,NA,NA,NA,NA,NA,
negative regulator of sigma E activity,NA,NA,0.684270375,gi|444240576,rseA,ko:K03597,Sigma factor RpoE negative regulatory protein RseA,"Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors",locus|B878_09502,
glutathione S-transferase,NA,-1.083973096,NA,gi|444240675,NA,ko:K07393,"Glutathione S-transferase, omega (EC 2.5.1.18)",CBSS-89187.3.peg.2957;
Glutathione: Non-redox reactions,locus|B878_08955,
,,,,,,,,,,
,,,,,,,,,,
,,,,,,,,,,
,,,,,,,,,,
PROTEINS DETECTED IN AT LEAST 13/18 SAMPLES WITH NO C N DIFFERENCES,,,,,,,,,,
,NA,NA,NA,gi|444237774,btuB,ko:K16092,Outer membrane vitamin B12 receptor BtuB,Coenzyme B12 biosynthesis,locus|B878_23373,*
,NA,NA,NA,gi|444238095,putA,ko:K13821,Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12),"Arginine and Ornithine Degradation;
Proline, 4-hydroxyproline uptake and utilization;
Proline, 4-hydroxyproline uptake and utilization;
Respiratory dehydrogenases 1",locus|B878_21832,*
,NA,NA,NA,gi|444238232,prs,ko:K00948,Ribose-phosphate pyrophosphokinase (EC 2.7.6.1),A Gammaproteobacteria Cluster Relating to Translation;
De Novo Purine Biosynthesis;
Pentose phosphate pathway,locus|B878_21110,*
,NA,NA,NA,gi|444238375,NA,NA,Capsule polysaccharide export protein,- none -,locus|B878_20495,*
,NA,NA,NA,gi|444238380,wbfB,NA,Putative outer membrane lipoprotein YmcA,Capsular Polysaccharides Biosynthesis and Assembly,locus|B878_20520,*
,NA,NA,NA,gi|444238413,pntB,ko:K00325,NAD(P) transhydrogenase subunit beta (EC 1.6.1.2),Phosphate metabolism,locus|B878_20280,*
,NA,NA,NA,gi|444238520,NA,"ko:K02803,ko:K02804","PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)",Chitin and N-acetylglucosamine utilization;
Sialic Acid Metabolism,locus|B878_19840,*
,NA,NA,NA,gi|444238883,rim,ko:K09860,Flagellar protein FlgP,Additional flagellar genes in Vibrionales,locus|B878_17996,*
,NA,NA,NA,gi|444239040,thrA,ko:K12524,Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3),Lysine Biosynthesis DAP Pathway;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis;
Threonine and Homoserine Biosynthesis,locus|B878_17309,*
,NA,NA,NA,gi|444239114,NA,ko:K11929,Outer membrane protein OmpT,- none -,locus|B878_16865,*
,NA,NA,NA,gi|444239147,bamC,ko:K07287,"Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor",Lipopolysaccharide assembly,locus|B878_16720,*
,NA,NA,NA,gi|444239292,bamE,ko:K06186,"Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex",Lipopolysaccharide assembly,locus|B878_16010,*
,NA,NA,NA,gi|444239400,dppD,"ko:K02031,ko:K02032",Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2),ABC transporter dipeptide (TC 3.A.1.5.2),locus|B878_15255,*
,NA,NA,NA,gi|444239746,atpE,ko:K02110,ATP synthase F0 sector subunit c (EC 7.1.2.2),F0F1-type ATP synthase,locus|B878_13565,*
,NA,NA,NA,gi|444239786,cydA,ko:K00425,Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-),Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases,locus|B878_13350,*
,NA,NA,NA,gi|444239830,rpsR,ko:K02963,"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent",Ribosome SSU bacterial,locus|B878_13155,*
,NA,NA,NA,gi|444239842,mrcA,ko:K05366,Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-),Peptidoglycan Biosynthesis;
Type IV pilus,locus|B878_13225,*
,NA,NA,NA,gi|444240371,prkA,ko:K07180,"Serine protein kinase (prkA protein), P-loop containing",- none -,locus|B878_10367,*
,NA,NA,NA,gi|444240557,mscS,ko:K03442,Protein involved in stability of MscS mechanosensitive channel,CBSS-316407.3.peg.2816,locus|B878_09407,*
,NA,NA,NA,gi|444240672,oppC,ko:K15582,Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1),ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_08940,*
,NA,NA,NA,gi|444240677,ackA1,ko:K00925,Acetate kinase (EC 2.7.2.1),"Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_08965,*
,NA,NA,NA,gi|444240705,fabD,ko:K00645,Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39),Fatty Acid Biosynthesis FASII,locus|B878_09105,*
,NA,NA,NA,gi|444240957,accB,ko:K02160,Biotin carboxyl carrier protein of acetyl-CoA carboxylase,Fatty Acid Biosynthesis FASII,locus|B878_07370,*
,NA,NA,NA,gi|444241028,gcvP,ko:K00281,Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2),Glycine and Serine Utilization;
Glycine cleavage system,locus|B878_07090,*
,NA,NA,NA,gi|444241056,NA,ko:K05805,Conserved uncharacterized protein CreA,- none -,locus|B878_07230,*
,NA,NA,NA,gi|444241381,NA,NA,"Outer membrane protein N, non-specific porin",- none -,locus|B878_05547,*
,NA,NA,NA,gi|444241735,bamA,ko:K07277,Outer membrane protein assembly factor YaeT precursor,Lipopolysaccharide assembly,locus|B878_03351,*
,NA,NA,NA,gi|444241775,nqrB,ko:K00347,Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-),Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes,locus|B878_03551,*
,NA,NA,NA,gi|444241776,nqrA,ko:K00346,Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-),Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes,locus|B878_03556,*
,NA,NA,NA,gi|444237545,ilvC,ko:K00053,Ketol-acid reductoisomerase (EC 1.1.1.86),Branched-Chain Amino Acid Biosynthesis;
Coenzyme A Biosynthesis,locus|B878_24318,*
,NA,NA,NA,gi|444237575,NA,NA,PglC,- none -,locus|B878_24211,*
,NA,NA,NA,gi|444237590,ilvC,ko:K00053,Ketol-acid reductoisomerase (EC 1.1.1.86),Branched-Chain Amino Acid Biosynthesis;
Coenzyme A Biosynthesis,locus|B878_24156,*
,NA,NA,NA,gi|444237644,pepD,ko:K01270,Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3),EC 3.4.13.- Dipeptidases;
Recycling of Peptidoglycan Amino Acids,locus|B878_23923,*
,NA,NA,NA,gi|444237716,purF,ko:K00764,Amidophosphoribosyltransferase (EC 2.4.2.14),Colicin V and Bacteriocin Production Cluster;
De Novo Purine Biosynthesis,locus|B878_23623,*
,NA,NA,NA,gi|444237761,NA,ko:K00793,Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9),"Riboflavin, FMN and FAD metabolism Extended;
riboflavin to FAD",locus|B878_23448,*
,NA,NA,NA,gi|444237791,infC,ko:K02520,Translation initiation factor 3,Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins),locus|B878_23278,*
,NA,NA,NA,gi|444237840,rluD,ko:K06180,LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) ## RluD,Ribosome biogenesis bacterial,locus|B878_23048,*
,NA,NA,NA,gi|444237909,pgi,ko:K01810,Glucose-6-phosphate isomerase (EC 5.3.1.9),Glycolysis and Gluconeogenesis,locus|B878_22772,*
,NA,NA,NA,gi|444238121,trxA,ko:K03671,Thioredoxin,- none -,locus|B878_21687,*
,NA,NA,NA,gi|444238176,pepP,ko:K01262,Xaa-Pro aminopeptidase (EC 3.4.11.9),CBSS-87626.3.peg.3639;
EC 3.4.11.- Aminopeptidases,locus|B878_21409,*
,NA,NA,NA,gi|444238193,tkt,ko:K00615,Transketolase (EC 2.2.1.1),Pentose phosphate pathway,locus|B878_21369,*
,NA,NA,NA,gi|444238196,aroG,ko:K01626,2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_21384,*
,NA,NA,NA,gi|444238240,kdsA,ko:K01627,2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55),A Gammaproteobacteria Cluster Relating to Translation,locus|B878_21150,*
,NA,NA,NA,gi|444238316,VV3248,ko:K01713,Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91),Phenylalanine and Tyrosine Branches from Chorismate,locus|B878_20730,*
,NA,NA,NA,gi|444238360,fmt,ko:K00604,Methionyl-tRNA formyltransferase (EC 2.1.2.9),CBSS-89187.3.peg.2957;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Folate Biosynthesis,locus|B878_20595,*
,NA,NA,NA,gi|444238373,NA,NA,"UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)",N-linked Glycosylation in Bacteria,locus|B878_20485,*
,NA,NA,NA,gi|444238403,pmbA,ko:K03592,"TldE protein, part of TldE/TldD proteolytic complex",Putative TldE-TldD proteolytic complex,locus|B878_20440,*
,NA,NA,NA,gi|444238508,gltA,ko:K01647,Citrate synthase (si) (EC 2.3.3.1),Glyoxylate bypass;
Serine-glyoxylate cycle;
TCA Cycle,locus|B878_19780,*
,NA,NA,NA,gi|444238511,pgm,ko:K01835,Phosphoglucomutase (EC 5.4.2.2),SeqA and Co-occurring Genes,locus|B878_19795,*
,NA,NA,NA,gi|444238519,glnS,ko:K01886,Glutaminyl-tRNA synthetase (EC 6.1.1.18),"tRNA aminoacylation, Glu and Gln",locus|B878_19835,*
,NA,NA,NA,gi|444238524,asnB,ko:K01953,Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4),"Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_19860,*
,NA,NA,NA,gi|444238653,metK,ko:K00789,S-adenosylmethionine synthetase (EC 2.5.1.6),Methionine Biosynthesis;
Methionine Degradation,locus|B878_19050,*
,NA,NA,NA,gi|444238682,NA,NA,hypothetical protein,- none -,locus|B878_18950,*
,NA,NA,NA,gi|444238785,tolB,ko:K03641,"tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins",Ton and Tol transport systems,locus|B878_18538,*
,NA,NA,NA,gi|444238791,adk,ko:K00939,NA,NA,NA,*
,NA,NA,NA,gi|444238980,valS,ko:K01873,Valyl-tRNA synthetase (EC 6.1.1.9),- none -,locus|B878_17519,*
,NA,NA,NA,gi|444238985,arcA,ko:K01478,Arginine deiminase (EC 3.5.3.6),Arginine Deiminase Pathway;
Arginine and Ornithine Degradation,locus|B878_17544,*
,NA,NA,NA,gi|444238989,yjgF,ko:K09022,2-iminobutanoate/2-iminopropanoate deaminase RidA/TdcF (EC 3.5.99.10),- none -,locus|B878_17564,*
,NA,NA,NA,gi|444239011,sdhA,ko:K00239,Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1),Serine-glyoxylate cycle;
Succinate dehydrogenase;
TCA Cycle,locus|B878_17424,*
,NA,NA,NA,gi|444239038,thrC,ko:K01733,Threonine synthase (EC 4.2.3.1),Threonine and Homoserine Biosynthesis,locus|B878_17299,*
,NA,NA,NA,gi|444239039,thrB,ko:K00872,Homoserine kinase (EC 2.7.1.39),CBSS-269482.1.peg.1294;
Methionine Biosynthesis;
Threonine and Homoserine Biosynthesis,locus|B878_17304,*
,NA,NA,NA,gi|444239083,gshA,ko:K01919,Glutamate--cysteine ligase (EC 6.3.2.2),Glutathione: Biosynthesis and gamma-glutamyl cycle,locus|B878_16985,*
,NA,NA,NA,gi|444239134,purM,ko:K01933,Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1),De Novo Purine Biosynthesis,locus|B878_16655,*
,NA,NA,NA,gi|444239135,upp,ko:K00761,Uracil phosphoribosyltransferase (EC 2.4.2.9),De Novo Pyrimidine Synthesis;
pyrimidine conversions,locus|B878_16660,*
,NA,NA,NA,gi|444239192,VV12320,NA,FIG01200730: hypothetical protein,- none -,locus|B878_16335,*
,NA,NA,NA,gi|444239236,purD,ko:K01945,Phosphoribosylamine--glycine ligase (EC 6.3.4.13),De Novo Purine Biosynthesis;
EC 6.3.4.- Ligases that form carbon-nitrogen bonds,locus|B878_16285,*
,NA,NA,NA,gi|444239237,purH,ko:K00602,IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3),De Novo Purine Biosynthesis;
De Novo Purine Biosynthesis,locus|B878_16290,*
,NA,NA,NA,gi|444239304,hisC,ko:K00817,Histidinol-phosphate aminotransferase (EC 2.6.1.9),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15765,*
,NA,NA,NA,gi|444239305,hisB,ko:K01089,Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19),Histidine Biosynthesis;
Histidine Biosynthesis;
Histidine Biosynthesis in plants;
Histidine Biosynthesis in plants,locus|B878_15770,*
,NA,NA,NA,gi|444239308,hisF,ko:K02500,Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15785,*
,NA,NA,NA,gi|444239309,hisI,ko:K11755,Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31),Histidine Biosynthesis;
Histidine Biosynthesis;
Histidine Biosynthesis in plants;
Histidine Biosynthesis in plants;
Zinc regulated enzymes,locus|B878_15790,*
,NA,NA,NA,gi|444239313,ppiB,ko:K03768,Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8),- none -,locus|B878_15810,*
,NA,NA,NA,gi|444239314,cysS,ko:K01883,Cysteinyl-tRNA synthetase (EC 6.1.1.16),Zinc regulated enzymes,locus|B878_15815,*
,NA,NA,NA,gi|444239318,NA,NA,DNA-binding protein inhibitor Id-2-related protein,- none -,locus|B878_15835,*
,NA,NA,NA,gi|444239335,hemX,ko:K02496,Uroporphyrinogen-III methyltransferase (EC 2.1.1.107),Coenzyme B12 biosynthesis,locus|B878_15580,*
,NA,NA,NA,gi|444239337,hemC,ko:K01749,Porphobilinogen deaminase (EC 2.5.1.61),- none -,locus|B878_15590,*
,NA,NA,NA,gi|444239483,pheT,ko:K01890,Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20),"tRNA aminoacylation, Phe",locus|B878_15090,*
,NA,NA,NA,gi|444239484,pheS,ko:K01889,Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20),"tRNA aminoacylation, Phe",locus|B878_15095,*
,NA,NA,NA,gi|444239741,atpD,ko:K02112,ATP synthase beta chain (EC 7.1.2.2),F0F1-type ATP synthase,locus|B878_13540,*
,NA,NA,NA,gi|444239807,purR,ko:K03604,Purine nucleotide synthesis repressor,Purine nucleotide synthesis regulator,locus|B878_13455,*
,NA,NA,NA,gi|444239823,pgi,ko:K01810,NA,NA,NA,*
,NA,NA,NA,gi|444239853,ppc,ko:K01595,Phosphoenolpyruvate carboxylase (EC 4.1.1.31),"Fermentations: Mixed acid;
Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_13280,*
,NA,NA,NA,gi|444239926,hisS,ko:K01892,Histidyl-tRNA synthetase (EC 6.1.1.21),At5g37530 (CsdL protein family),locus|B878_12825,*
,NA,NA,NA,gi|444239930,ndk,ko:K00940,Nucleoside diphosphate kinase (EC 2.7.4.6),pyrimidine conversions,locus|B878_12845,*
,NA,NA,NA,gi|444239931,pepB,ko:K07751,Peptidase B (EC 3.4.11.23),EC 3.4.11.- Aminopeptidases,locus|B878_12850,*
,NA,NA,NA,gi|444239972,yceH,ko:K09915,Protein of unknown function YceH,- none -,locus|B878_12620,*
,NA,NA,NA,gi|444240012,NA,ko:K09796,"Copper metallochaperone, bacterial analog of Cox17 protein",Biogenesis of cytochrome c oxidases,locus|B878_12440,*
,NA,NA,NA,gi|444240105,NA,NA,FIG00920305: hypothetical protein,- none -,locus|B878_11748,*
,NA,NA,NA,gi|444240285,purA,ko:K01939,Adenylosuccinate synthetase (EC 6.3.4.4),EC 6.3.4.- Ligases that form carbon-nitrogen bonds,locus|B878_10866,*
,NA,NA,NA,gi|444240300,crp,ko:K10914,Cyclic AMP receptor protein,CytR regulation;
cAMP signaling in bacteria,locus|B878_10941,*
,NA,NA,NA,gi|444240309,slyD,ko:K03775,FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8),Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis,locus|B878_10986,*
,NA,NA,NA,gi|444240313,fkpA,ko:K03772,FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8),Peptidyl-prolyl cis-trans isomerase;
Potassium homeostasis,locus|B878_11006,*
,NA,NA,NA,gi|444240320,fusA1,ko:K02355,Translation elongation factor G,Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Translation elongation factor G family;
Translation elongation factors bacterial;
Universal GTPases,locus|B878_11041,*
,NA,NA,NA,gi|444240374,kdsB,ko:K00979,3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38),- none -,locus|B878_10382,*
,NA,NA,NA,gi|444240393,hinT,ko:K02503,YcfF/hinT protein: a purine nucleoside phosphoramidase,- none -,locus|B878_10477,*
,NA,NA,NA,gi|444240416,NA,ko:K11209,Glutathione S-transferase (EC 2.5.1.18),Glutathione: Non-redox reactions,locus|B878_10102,*
,NA,NA,NA,gi|444240513,aceF,ko:K00627,Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12),"Dehydrogenase complexes;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_09652,*
,NA,NA,NA,gi|444240523,panB,ko:K00606,3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11),Coenzyme A Biosynthesis,locus|B878_09702,*
,NA,NA,NA,gi|444240556,fbaA,ko:K01624,Fructose-bisphosphate aldolase class II (EC 4.1.2.13),Glycolysis and Gluconeogenesis,locus|B878_09402,*
,NA,NA,NA,gi|444240562,serA,ko:K00058,D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95),Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis,locus|B878_09432,*
,NA,NA,NA,gi|444240584,pdxJ,ko:K03474,Pyridoxine 5'-phosphate synthase (EC 2.6.99.2),Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_09542,*
,NA,NA,NA,gi|444240595,truD,ko:K06176,tRNA pseudouridine 13 synthase (EC 4.2.1.-),tRNA modification Archaea;
tRNA processing,locus|B878_09597,*
,NA,NA,NA,gi|444240602,recA,ko:K03553,RecA protein,"DNA-replication;
DNA repair, bacterial;
DNA repair, bacterial RecFOR pathway;
DNA repair, bacterial UmuCD system;
RecA and RecX",locus|B878_09632,*
,NA,NA,NA,gi|444240628,pdhA,ko:K00161,"Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)",Dehydrogenase complexes;
Isoleucine degradation;
Valine degradation,locus|B878_09242,*
,NA,NA,NA,gi|444240673,oppD,ko:K15583,Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1),ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_08945,*
,NA,NA,NA,gi|444240676,pta,ko:K13788,Phosphate acetyltransferase (EC 2.3.1.8),"Fermentations: Lactate;
Fermentations: Mixed acid;
Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_08960,*
,NA,NA,NA,gi|444240690,metG,ko:K01874,Methionyl-tRNA synthetase (EC 6.1.1.10),- none -,locus|B878_09030,*
,NA,NA,NA,gi|444240704,fabH,ko:K00648,"3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)",- none -,locus|B878_09100,*
,NA,NA,NA,gi|444240886,aroC,ko:K01736,Chorismate synthase (EC 4.2.3.5),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_08225,*
,NA,NA,NA,gi|444240898,SO1991,NA,FIG01201286: hypothetical protein,- none -,locus|B878_07665,*
,NA,NA,NA,gi|444240930,zwf,ko:K00036,Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49),Entner-Doudoroff Pathway;
Pentose phosphate pathway,locus|B878_07825,*
,NA,NA,NA,gi|444240981,pfkA,ko:K00850,6-phosphofructokinase (EC 2.7.1.11),Glycolysis and Gluconeogenesis,locus|B878_07490,*
,NA,NA,NA,gi|444240983,groS,ko:K04078,Heat shock protein 10 kDa family chaperone GroES,GroEL GroES,locus|B878_07500,*
,NA,NA,NA,gi|444241003,secB,ko:K03071,"Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)",Glutaredoxin 3 containing cluster,locus|B878_07600,*
,NA,NA,NA,gi|444241005,gpmI,ko:K15633,"2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.12)",Entner-Doudoroff Pathway;
Glycolysis and Gluconeogenesis,locus|B878_07610,*
,NA,NA,NA,gi|444241068,NA,NA,FIG01201176: hypothetical protein,- none -,locus|B878_07290,*
,NA,NA,NA,gi|444241123,dacA,ko:K07258,D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4),CBSS-84588.1.peg.1247;
Murein Hydrolases;
Peptidoglycan Biosynthesis,locus|B878_06923,*
,NA,NA,NA,gi|444241189,rbsK,ko:K00852,Ribokinase (EC 2.7.1.15),D-ribose utilization;
Deoxyribose and Deoxynucleoside Catabolism,locus|B878_06616,*
,NA,NA,NA,gi|444241212,aspC,ko:K00832,Aspartate aminotransferase (EC 2.6.1.1),"Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis",locus|B878_06043,*
,NA,NA,NA,gi|444241240,gyrA,ko:K02469,DNA gyrase subunit A (EC 5.99.1.3),"Cell Division Subsystem including YidCD;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones",locus|B878_06193,*
,NA,NA,NA,gi|444241267,trpB,ko:K01696,Tryptophan synthase beta chain (EC 4.2.1.20),Tryptophan synthesis,locus|B878_06338,*
,NA,NA,NA,gi|444241268,trpA,ko:K01695,Tryptophan synthase alpha chain (EC 4.2.1.20),Tryptophan synthesis,locus|B878_06343,*
,NA,NA,NA,gi|444241291,deoD,ko:K03784,Purine nucleoside phosphorylase (EC 2.4.2.1),Deoxyribose and Deoxynucleoside Catabolism;
pyrimidine conversions,locus|B878_05779,*
,NA,NA,NA,gi|444241309,pnp,ko:K00962,Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8),Bacterial RNA-metabolizing Zn-dependent hydrolases;
Polyadenylation bacterial,locus|B878_05879,*
,NA,NA,NA,gi|444241411,NA,ko:K01322,Prolyl endopeptidase (EC 3.4.21.26),EC 3.4.21.- Serine endopeptidase,locus|B878_04947,*
,NA,NA,NA,gi|444241519,tig,ko:K03545,Cell division trigger factor (EC 5.2.1.8),Bacterial Cell Division,locus|B878_04776,*
,NA,NA,NA,gi|444241647,NA,NA,Secreted and surface protein containing fasciclin-like repeats,- none -,locus|B878_03791,*
,NA,NA,NA,gi|444241664,SO3571,ko:K09909,Acetylornithine deacetylase (EC 3.5.1.16),Arginine Biosynthesis extended,locus|B878_03876,*
,NA,NA,NA,gi|444241741,pyrH,ko:K09903,Uridine monophosphate kinase (EC 2.7.4.22),CBSS-312309.3.peg.1965,locus|B878_03381,*
,NA,NA,NA,gi|444241742,tsf,ko:K02357,Translation elongation factor Ts,CBSS-312309.3.peg.1965;
Translation elongation factors bacterial,locus|B878_03386,*
,NA,NA,NA,gi|444241758,proS,ko:K01881,"Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type",- none -,locus|B878_03466,*
,NA,NA,NA,gi|444241760,yaeP,NA,UPF0253 protein YaeP,- none -,locus|B878_03476,*
,NA,NA,NA,gi|444241780,ppiA,ko:K03767,Peptidyl-prolyl cis-trans isomerase PpiA (EC 5.2.1.8),- none -,locus|B878_03576,*
,NA,NA,NA,gi|444241814,NA,NA,FIG00919535: hypothetical protein,- none -,locus|B878_02896,*
,NA,NA,NA,gi|444241869,metC,ko:K01760,Cystathionine beta-lyase (EC 4.4.1.8),L-Cystine Uptake and Metabolism;
Methionine Biosynthesis,locus|B878_03181,*
,NA,NA,NA,gi|444241880,pspA,ko:K03969,"Phage shock protein A @ Suppressor of sigma54-dependent transcription, PspA-like",Phage shock protein (psp) operon,locus|B878_03236,*
,NA,NA,NA,gi|444241941,cysQ,ko:K01082,"3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)",Inorganic Sulfur Assimilation,locus|B878_02696,*
,NA,NA,NA,gi|444241943,nfuA,ko:K07400,[4Fe-4S] cluster carrier protein NfuA,- none -,locus|B878_02706,*
,NA,NA,NA,gi|444241957,rpoZ,ko:K03060,DNA-directed RNA polymerase omega subunit (EC 2.7.7.6),CBSS-176299.4.peg.1292;
RNA polymerase bacterial,locus|B878_02776,*
,NA,NA,NA,gi|444241975,hns,ko:K03746,DNA-binding protein H-NS,- none -,locus|B878_01966,*
,NA,NA,NA,gi|444241980,purB,ko:K01756,Adenylosuccinate lyase (EC 4.3.2.2),De Novo Purine Biosynthesis,locus|B878_01991,*
,NA,NA,NA,gi|444242070,NA,ko:K02553,Ribonuclease E inhibitor RraA,"RNA processing and degradation, bacterial",locus|B878_01489,*
,NA,NA,NA,gi|444242079,gltB,ko:K00265,Glutamate synthase [NADPH] large chain (EC 1.4.1.13),"Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_01534,*
,NA,NA,NA,gi|444242089,carA,ko:K01956,Carbamoyl-phosphate synthase small chain (EC 6.3.5.5),De Novo Pyrimidine Synthesis;
Macromolecular synthesis operon,locus|B878_01584,*
,NA,NA,NA,gi|444242095,ftsZ,ko:K03531,Cell division protein FtsZ,Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ,locus|B878_01614,*
,NA,NA,NA,gi|444242115,sspA,ko:K03599,Stringent starvation protein A,Carbon Starvation,locus|B878_01714,*
,NA,NA,NA,gi|444242122,degQ,"ko:K04771,ko:K04772","Outer membrane stress sensor protease DegQ, serine protease","Periplasmic Stress Response;
Proteolysis in bacteria, ATP-dependent",locus|B878_01759,*
,NA,NA,NA,gi|444242132,hldE,ko:K03272,D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase (EC 2.7.7.70) / D-glycero-beta-D-manno-heptose-7-phosphate kinase (EC 2.7.1.167),LOS core oligosaccharide biosynthesis;
LOS core oligosaccharide biosynthesis,locus|B878_01809,*
,NA,NA,NA,gi|444242149,NA,ko:K09117,Transamidase GatB domain protein,Macromolecular synthesis operon,locus|B878_01904,*
,NA,NA,NA,gi|444242151,rpoD,ko:K03086,RNA polymerase sigma factor RpoD,"Flagellum;
Macromolecular synthesis operon;
Transcription initiation, bacterial sigma factors",locus|B878_01914,*
,NA,NA,NA,gi|444242168,tpiA,ko:K01803,Triosephosphate isomerase (EC 5.3.1.1),Glycolysis and Gluconeogenesis,locus|B878_00894,*
,NA,NA,NA,gi|444242233,msrA,ko:K07304,Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11),Cluster Ytf and putative sugar transporter;
Peptide methionine sulfoxide reductase;
Putative sugar ABC transporter (ytf cluster),locus|B878_01239,*
,NA,NA,NA,gi|444242239,fbp,ko:K03841,"Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)",Cluster Ytf and putative sugar transporter;
Glycolysis and Gluconeogenesis;
Putative sugar ABC transporter (ytf cluster),locus|B878_01269,*
,NA,NA,NA,gi|444242259,apaG,ko:K06195,ApaG protein,EC49-61,locus|B878_01369,*
,NA,NA,NA,gi|444242267,leuC,ko:K01703,3-isopropylmalate dehydratase large subunit (EC 4.2.1.33),Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis,locus|B878_01409,*
,NA,NA,NA,gi|444242421,potD,ko:K11069,"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)",Polyamine Metabolism,locus|B878_00705,*
,NA,NA,NA,gi|444242448,fabA,ko:K01716,3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.59),- none -,locus|B878_00855,*
,NA,NA,NA,gi|444237839,bamD,ko:K05807,Outer membrane beta-barrel assembly protein BamD,Lipopolysaccharide assembly,locus|B878_23043,*
,NA,NA,NA,gi|444238073,NA,NA,FIG008443: hypothetical protein,- none -,locus|B878_21862,*
,NA,NA,NA,gi|444238621,NA,NA,FIG01200599: hypothetical protein,- none -,locus|B878_19395,*
,NA,NA,NA,gi|444239539,mgsA,ko:K01734,Methylglyoxal synthase (EC 4.2.3.3),Methylglyoxal Metabolism,locus|B878_14795,*
,NA,NA,NA,gi|444240179,queF,ko:K06879,NA,NA,NA,*
,NA,NA,NA,gi|444240590,pyrG,ko:K01937,CTP synthase (EC 6.3.4.2),EC 6.3.4.- Ligases that form carbon-nitrogen bonds;
pyrimidine conversions,locus|B878_09572,*
,NA,NA,NA,gi|444241052,NA,"ko:K01183,ko:K21606",Chitodextrinase precursor (EC 3.2.1.14),Chitin and N-acetylglucosamine utilization,locus|B878_07210,*
,NA,NA,NA,gi|444241242,NA,NA,NA,NA,NA,*
,NA,NA,NA,gi|444241726,tilS,ko:K04075,tRNA(Ile)-lysidine synthetase (EC 6.3.4.19),Cell division-ribosomal stress proteins cluster;
EC 6.3.4.- Ligases that form carbon-nitrogen bonds;
tRNA processing,locus|B878_03306,*
,NA,NA,NA,gi|444241786,ompK,ko:K05517,Outer membrane protein OmpK,- none -,locus|B878_03606,*
,NA,NA,NA,gi|444242121,yhcB,ko:K09908,Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III),- none -,locus|B878_01754,*
,NA,NA,NA,gi|444237853,tmk,ko:K00943,Thymidylate kinase (EC 2.7.4.9),pyrimidine conversions,locus|B878_22961,*
,NA,NA,NA,gi|444237882,cycB,NA,Cytochrome c5,- none -,locus|B878_22872,*
,NA,NA,NA,gi|444237896,pdxB,ko:K03473,Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290),Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_22787,*
,NA,NA,NA,gi|444238036,NA,ko:K06377,NA,NA,NA,*
,NA,NA,NA,gi|444238116,fre,ko:K05368,Riboflavin reductase (NAD(P)H) (EC 1.5.1.41) @ Aquacobalamin reductase (EC 1.16.1.3),Ubiquinone Biosynthesis;
Ubiquinone biosynthesis -- gjo,locus|B878_21662,*
,NA,NA,NA,gi|444238336,NA,ko:K01840,Phosphomannomutase (EC 5.4.2.8),Mannose Metabolism,locus|B878_20665,*
,NA,NA,NA,gi|444238385,murA,ko:K00790,UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7),Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_20350,*
,NA,NA,NA,gi|444238388,mlaC,ko:K07323,"Uncharacterized ABC transporter, auxiliary component YrbC",Lipopolysaccharide assembly,locus|B878_20365,*
,NA,NA,NA,gi|444238411,NA,NA,Copper-sensing two-component system response regulator CusR,Cobalt-zinc-cadmium resistance;
Copper homeostasis;
Orphan regulatory proteins,locus|B878_20270,*
,NA,NA,NA,gi|444238563,NA,NA,hypothetical protein,- none -,locus|B878_19505,*
,NA,NA,NA,gi|444238674,yggX,NA,Fe(2+)-trafficking and iron-sulfur cluster repair protein YggX,Heat shock dnaK gene cluster extended,locus|B878_19155,*
,NA,NA,NA,gi|444238694,moeA,ko:K03750,Molybdopterin biosynthesis protein MoeA,Molybdenum cofactor biosynthesis,locus|B878_19010,*
,NA,NA,NA,gi|444238713,NA,NA,"oxidoreductase, short-chain dehydrogenase/reductase family",- none -,locus|B878_18865,*
,NA,NA,NA,gi|444238867,napA,ko:K02567,NA,NA,NA,*
,NA,NA,NA,gi|444238948,VVA0007,ko:K02030,ABC-type amino acid transport/signal transduction system,- none -,locus|B878_17601,*
,NA,NA,NA,gi|444238997,argS,ko:K01887,Arginyl-tRNA synthetase (EC 6.1.1.19),"tRNA aminoacylation, Arg",locus|B878_17344,*
,NA,NA,NA,gi|444239137,VV2512,ko:K09938,FIG01200261: hypothetical protein,- none -,locus|B878_16670,*
,NA,NA,NA,gi|444239156,NA,ko:K07223,"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup",- none -,locus|B878_16765,*
,NA,NA,NA,gi|444239240,cadC,ko:K03765,Transcriptional activator of cad operon,- none -,locus|B878_16305,*
,NA,NA,NA,gi|444239306,hisH,ko:K02501,Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-),Histidine Biosynthesis;
Histidine Biosynthesis in plants,locus|B878_15775,*
,NA,NA,NA,gi|444239442,maeA,ko:K00027,Malate dehydrogenase (oxaloacetate-decarboxylating) (EC 1.1.1.38),"Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_15155,*
,NA,NA,NA,gi|444239768,glyQ,ko:K01878,Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14),- none -,locus|B878_13685,*
,NA,NA,NA,gi|444239805,torR,ko:K07772,Trimethylamine-N-oxide operon transcriptional regulatory protein TorR ## sensor kinase TorS,- none -,locus|B878_13445,*
,NA,NA,NA,gi|444239925,NA,NA,Mlr7403 protein,CBSS-290633.1.peg.1906,locus|B878_12820,*
,NA,NA,NA,gi|444240021,malS,ko:K01176,Periplasmic alpha-amylase (EC 3.2.1.1),Maltose and Maltodextrin Utilization,locus|B878_12485,*
,NA,NA,NA,gi|444240142,yaiL,ko:K09912,Nucleoprotein/polynucleotide-associated enzyme,- none -,locus|B878_11543,*
,NA,NA,NA,gi|444240516,hpt,ko:K00760,Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8),Cell division-ribosomal stress proteins cluster,locus|B878_09667,*
,NA,NA,NA,gi|444240577,rseB,ko:K03598,Sigma factor RpoE negative regulatory protein RseB,"Periplasmic Stress Response;
Transcription initiation, bacterial sigma factors",locus|B878_09507,*
,NA,NA,NA,gi|444240636,NA,ko:K01077,Alkaline phosphatase (EC 3.1.3.1),Phosphate metabolism,locus|B878_09282,*
,NA,NA,NA,gi|444240691,mrp,ko:K03593,"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like",- none -,locus|B878_09035,*
,NA,NA,NA,gi|444240706,fabG,ko:K00059,3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100),Fatty Acid Biosynthesis FASII,locus|B878_09110,*
,NA,NA,NA,gi|444240743,ddl,ko:K01921,D-alanine--D-alanine ligase (EC 6.3.2.4),Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ,locus|B878_08740,*
,NA,NA,NA,gi|444240998,NA,NA,"Transcriptional regulator, TetR family",- none -,locus|B878_07575,*
,NA,NA,NA,gi|444241081,crl,ko:K11926,Curlin genes transcriptional activator,- none -,locus|B878_06703,*
,NA,NA,NA,gi|444241243,nrdA,ko:K00525,"Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)",Ribonucleotide reduction,locus|B878_06208,*
,NA,NA,NA,gi|444241403,ldhA,ko:K03778,D-lactate dehydrogenase (EC 1.1.1.28),Fermentations: Lactate;
Fermentations: Mixed acid,locus|B878_05657,*
,NA,NA,NA,gi|444241477,kbl,ko:K00639,2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29),Glycine Biosynthesis;
Glycine and Serine Utilization,locus|B878_05287,*
,NA,NA,NA,gi|444241491,NA,ko:K09948,protein of unknown function DUF1244,- none -,locus|B878_04636,*
,NA,NA,NA,gi|444241784,NA,NA,FIG01202705: hypothetical protein,- none -,locus|B878_03596,*
,NA,NA,NA,gi|444241942,nudE,ko:K08312,ADP compounds hydrolase NudE,Nudix proteins (nucleoside triphosphate hydrolases),locus|B878_02701,*
,NA,NA,NA,gi|444241948,NA,NA,FIG01200535: hypothetical protein,- none -,locus|B878_02731,*
,NA,NA,NA,gi|444241950,ompR,ko:K07659,Two-component system response regulator OmpR,- none -,locus|B878_02741,*
,NA,NA,NA,gi|444242072,arcA,ko:K07773,Aerobic respiration control protein arcA,- none -,locus|B878_01499,*
,NA,NA,NA,gi|444242080,gltD,ko:K00266,Glutamate synthase [NADPH] small chain (EC 1.4.1.13),"Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_01539,*
,NA,NA,NA,gi|444242136,NA,ko:K07220,Phosphate transport regulator (distant homolog of PhoU),Phosphate metabolism,locus|B878_01839,*
,NA,NA,NA,gi|444242174,glpX,ko:K02446,"Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)",Glycolysis and Gluconeogenesis,locus|B878_00924,*
,NA,NA,NA,gi|444242175,zapB,ko:K09892,Cell division protein ZapB,- none -,locus|B878_00929,*
,NA,NA,NA,gi|444242226,NA,ko:K09950,FIG003461: hypothetical protein,- none -,locus|B878_01204,*
,NA,NA,NA,gi|444238368,NA,NA,NA,NA,NA,*
,NA,NA,NA,gi|444238787,tolR,ko:K03560,"Tol biopolymer transport system, TolR protein",Ton and Tol transport systems,locus|B878_18548,*
,NA,NA,NA,gi|444239049,phoR,ko:K07636,Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3),High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_17085,*
,NA,NA,NA,gi|444239873,sppA,ko:K04773,Protease IV (EC 3.4.21.-),- none -,locus|B878_12970,*
,NA,NA,NA,gi|444239986,NA,NA,Putative threonine efflux protein,- none -,locus|B878_12690,*
,NA,NA,NA,gi|444240387,ndh,ko:K03885,NADH dehydrogenase (EC 1.6.99.3),Respiratory dehydrogenases 1,locus|B878_10447,*
,NA,NA,NA,gi|444240671,oppB,ko:K15581,Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1),ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_08935,*
,NA,NA,NA,gi|444240921,NA,ko:K07793,Tricarboxylate transport membrane protein TctA,CBSS-49338.1.peg.459;
Tricarboxylate transport cassette;
Tricarboxylate transport system,locus|B878_07780,*
,NA,NA,NA,gi|444241078,yieG,ko:K06901,Xanthine/uracil/thiamine/ascorbate permease family protein,Purine Utilization,locus|B878_06688,*
,NA,NA,NA,gi|444241213,NA,NA,FIG01201079: hypothetical protein,- none -,locus|B878_06048,*
,NA,NA,NA,gi|444242439,ccoN,ko:K00404,Cytochrome c oxidase subunit CcoN (EC 1.9.3.1),Terminal cytochrome C oxidases,locus|B878_00795,*
,NA,NA,NA,gi|444238126,recQ,ko:K03654,ATP-dependent DNA helicase RecQ,"DNA-replication;
DNA repair, bacterial RecFOR pathway",locus|B878_21712,*
,NA,NA,NA,gi|444238136,flgE,ko:K02390,Flagellar hook protein FlgE,Flagellum,locus|B878_21607,*
,NA,NA,NA,gi|444238404,yjgA,ko:K09889,FIG138315: Putative alpha helix protein,Putative TldE-TldD proteolytic complex,locus|B878_20445,*
,NA,NA,NA,gi|444238986,argF,ko:K00611,Ornithine carbamoyltransferase (EC 2.1.3.3),Arginine Biosynthesis extended;
Arginine Deiminase Pathway;
Arginine and Ornithine Degradation;
CBSS-320372.3.peg.6046,locus|B878_17549,*
,NA,NA,NA,gi|444239086,NA,ko:K00344,NADPH:quinone reductase,- none -,locus|B878_17000,*
,NA,NA,NA,gi|444239088,oadA,ko:K01571,Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3),"Na+ translocating decarboxylases and related biotin-dependent enzymes;
Pyruvate metabolism I: anaplerotic reactions, PEP",locus|B878_17010,*
,NA,NA,NA,gi|444239569,aroF,ko:K01626,2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_14655,*
,NA,NA,NA,gi|444239806,torD,ko:K03533,Chaperone protein TorD,- none -,locus|B878_13450,*
,NA,NA,NA,gi|444239854,aphA,ko:K10917,"Transcriptional regulator, PadR family",- none -,locus|B878_13285,*
,NA,NA,NA,gi|444240224,NA,NA,"Transcriptional regulator, LysR family",- none -,locus|B878_11073,*
,NA,NA,NA,gi|444240396,udp,ko:K00757,Uridine phosphorylase (EC 2.4.2.3),pyrimidine conversions,locus|B878_10492,*
,NA,NA,NA,gi|444240399,NA,NA,Inosine monophosphate dehydrogenase-related protein,- none -,locus|B878_10507,*
,NA,NA,NA,gi|444240571,ygfZ,ko:K06980,Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress,- none -,locus|B878_09477,*
,NA,NA,NA,gi|444240575,rpoE,ko:K03088,RNA polymerase sigma factor RpoE,"Transcription initiation, bacterial sigma factors",locus|B878_09497,*
,NA,NA,NA,gi|444240797,hdfR,NA,"Transcriptional regulator, LysR family",- none -,locus|B878_08380,*
,NA,NA,NA,gi|444240897,NA,NA,FIGfam020323,- none -,locus|B878_07660,*
,NA,NA,NA,gi|444240937,NA,ko:K01993,"Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG",- none -,locus|B878_07860,*
,NA,NA,NA,gi|444241004,yibN,NA,FIG136845: Rhodanese-related sulfurtransferase,Glutaredoxin 3 containing cluster,locus|B878_07605,*
,NA,NA,NA,gi|444241209,NA,NA,FIG01200041: hypothetical protein,- none -,locus|B878_06028,*
,NA,NA,NA,gi|444241258,NA,ko:K09901,FIG00920084: hypothetical protein,- none -,locus|B878_06283,*
,NA,NA,NA,gi|444241298,prfC,ko:K02837,Peptide chain release factor 3,Translation termination factors bacterial,locus|B878_05814,*
,NA,NA,NA,gi|444241423,NA,ko:K19967,low-specificity D-threonine aldolase,Serine-glyoxylate cycle;
Threonine degradation,locus|B878_05007,*
,NA,NA,NA,gi|444241593,pyrC,ko:K01465,Dihydroorotase (EC 3.5.2.3),De Novo Pyrimidine Synthesis;
Zinc regulated enzymes,locus|B878_04401,*
,NA,NA,NA,gi|444242078,gltD,ko:K00266,Glutamate synthase [NADPH] small chain (EC 1.4.1.13),"Ammonia assimilation;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_01529,*
,NA,NA,NA,gi|444239062,NA,NA,Putative acetoin utilization protein AcuB,- none -,locus|B878_17160,*
,NA,NA,NA,gi|444239402,dppB,ko:K02033,"Peptide ABC transporter, permease component",- none -,locus|B878_15265,*
,NA,NA,NA,gi|444240522,panC,ko:K01918,Pantoate--beta-alanine ligase (EC 6.3.2.1),Coenzyme A Biosynthesis,locus|B878_09697,*
,NA,NA,NA,gi|444240574,nadB,ko:K00278,L-aspartate oxidase (EC 1.4.3.16),Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global,locus|B878_09492,*
,NA,NA,NA,gi|444240599,rpoS,ko:K03087,RNA polymerase sigma factor RpoS,"Transcription initiation, bacterial sigma factors",locus|B878_09617,*
,NA,NA,NA,gi|444241933,epsG,ko:K02456,General secretion pathway protein G,General Secretion Pathway,locus|B878_02656,*
,NA,NA,NA,gi|444241981,NA,NA,FIG002577: Putative lipoprotein precursor,Putative oxidase COG2907,locus|B878_01996,*
,NA,NA,NA,gi|444237745,NA,ko:K07175,hypothetical protein,- none -,locus|B878_23508,*
,NA,NA,NA,gi|444237877,yqiC,ko:K09806,Ubiquinone biosynthesis protein UbiK,- none -,locus|B878_22847,*
,NA,NA,NA,gi|444238372,NA,ko:K13010,Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase,N-linked Glycosylation in Bacteria,locus|B878_20480,*
,NA,NA,NA,gi|444238604,NA,ko:K01299,Thermostable carboxypeptidase 1 (EC 3.4.17.19),- none -,locus|B878_19310,*
,NA,NA,NA,gi|444238693,folE,ko:K01495,GTP cyclohydrolase I (EC 3.5.4.16) type 1,Folate Biosynthesis;
Molybdenum cofactor biosynthesis;
Zinc regulated enzymes,locus|B878_19005,*
,NA,NA,NA,gi|444238888,cheV,ko:K03415,Chemotaxis protein CheV (EC 2.7.3.-),Bacterial Chemotaxis;
Flagellar motility,locus|B878_18021,*
,NA,NA,NA,gi|444238984,rraB,ko:K09893,Ribonuclease E inhibitor RraB,"RNA processing and degradation, bacterial",locus|B878_17539,*
,NA,NA,NA,gi|444238993,purU,ko:K01433,Formyltetrahydrofolate deformylase (EC 3.5.1.10),One-carbon metabolism by tetrahydropterines,locus|B878_17324,*
,NA,NA,NA,gi|444239121,clpA,ko:K03694,ATP-dependent Clp protease ATP-binding subunit ClpA,"Proteolysis in bacteria, ATP-dependent",locus|B878_16900,*
,NA,NA,NA,gi|444239324,torA,ko:K07811,Trimethylamine-N-oxide reductase (EC 1.6.6.9),- none -,locus|B878_15865,*
,NA,NA,NA,gi|444239350,yigL,NA,FIG01289452: hypothetical protein,- none -,locus|B878_15655,*
,NA,NA,NA,gi|444239762,dnaN,ko:K02338,DNA polymerase III beta subunit (EC 2.7.7.7),Cell Division Subsystem including YidCD;
DNA-replication,locus|B878_13655,*
,NA,NA,NA,gi|444240116,proQ,ko:K03607,ProQ: influences osmotic activation of compatible solute ProP,"Proline, 4-hydroxyproline uptake and utilization",locus|B878_11803,*
,NA,NA,NA,gi|444240125,aroH,ko:K01626,2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_11848,*
,NA,NA,NA,gi|444240144,NA,NA,Inner membrane protein YqiK,- none -,locus|B878_11553,*
,NA,NA,NA,gi|444240515,luxR,ko:K10913,Quorum-sensing regulator of virulence HapR,Vibrio Polysaccharide (VPS) Biosynthesis,locus|B878_09662,*
,NA,NA,NA,gi|444240561,NA,ko:K09807,Protein of unknown function DUF541,CBSS-316407.3.peg.2816,locus|B878_09427,*
,NA,NA,NA,gi|444240716,phnA,ko:K06193,Alkylphosphonate utilization operon protein PhnA,- none -,locus|B878_08575,*
,NA,NA,NA,gi|444240884,prmB,ko:K07320,"Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p",YrdC-YciO-Sua5 and associated protein families,locus|B878_08215,*
,NA,NA,NA,gi|444241163,nfnB,ko:K10679,1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7),Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis,locus|B878_06486,*
,NA,NA,NA,gi|444241202,NA,NA,NA,NA,NA,*
,NA,NA,NA,gi|444241224,VV2111,NA,FIG01199550: hypothetical protein,- none -,locus|B878_06113,*
,NA,NA,NA,gi|444242242,tbpA,ko:K02064,"Thiamin ABC transporter, substrate-binding component",Thiamin biosynthesis,locus|B878_01284,*
,NA,NA,NA,gi|444242286,sbcB,ko:K01141,Exodeoxyribonuclease I (EC 3.1.11.1),DNA Repair Base Excision,locus|B878_00020,*
,NA,NA,NA,gi|444237878,NA,ko:K18138,RND multidrug efflux transporter; Acriflavin resistance protein,Multidrug Resistance Efflux Pumps,locus|B878_22852,*
,NA,NA,NA,gi|444238788,tolQ,ko:K03562,MotA/TolQ/ExbB proton channel family protein,Ton and Tol transport systems,locus|B878_18553,*
,NA,NA,NA,gi|444239577,pheA,ko:K14170,Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51),Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate,locus|B878_14695,*
,NA,NA,NA,gi|444241661,fpr,ko:K00528,Ferredoxin--NADP(+) reductase (EC 1.18.1.2),Biogenesis of cytochrome c oxidases;
Inorganic Sulfur Assimilation,locus|B878_03861,*
,NA,NA,NA,gi|444241736,rseP,ko:K11749,"Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage",- none -,locus|B878_03356,*
,NA,NA,NA,gi|444241771,nqrF,ko:K00351,Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-),Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes,locus|B878_03531,*
,NA,NA,NA,gi|444242387,NA,ko:K03406,Methyl-accepting chemotaxis protein I (serine chemoreceptor protein),Bacterial Chemotaxis,locus|B878_00525,*
,NA,NA,NA,gi|444242431,fnr,ko:K01420,Fumarate and nitrate reduction regulatory protein Fnr,Oxidative stress,locus|B878_00755,*
,NA,NA,NA,gi|444237744,tldD,ko:K03568,"TldD protein, part of TldE/TldD proteolytic complex",CBSS-316057.3.peg.563;
CBSS-354.1.peg.2917;
Putative TldE-TldD proteolytic complex,locus|B878_23503,*
,NA,NA,NA,gi|444237752,apt,ko:K00759,Adenine phosphoribosyltransferase (EC 2.4.2.7),cAMP signaling in bacteria,locus|B878_23483,*
,NA,NA,NA,gi|444237820,azu,NA,Azurin,- none -,locus|B878_23128,*
,NA,NA,NA,gi|444238182,thiC,ko:K03147,Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17),Thiamin biosynthesis,locus|B878_21439,*
,NA,NA,NA,gi|444238512,seqA,ko:K03645,"SeqA protein, negative modulator of initiation of replication",SeqA and Co-occurring Genes,locus|B878_19800,*
,NA,NA,NA,gi|444238668,rdgB,ko:K02428,"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)",Heat shock dnaK gene cluster extended;
Housecleaning nucleoside triphosphate pyrophosphatases,locus|B878_19125,*
,NA,NA,NA,gi|444239578,raiA,ko:K05809,Ribosome hibernation protein YfiA,Ribosome activity modulation,locus|B878_14700,*
,NA,NA,NA,gi|444239821,infA,ko:K02518,NA,NA,NA,*
,NA,NA,NA,gi|444240081,NA,NA,"Copper metallochaperone, bacterial analog of Cox17 protein",Biogenesis of cytochrome c oxidases,locus|B878_12028,*
,NA,NA,NA,gi|444240095,NA,NA,Zinc-binding GTPase YeiR,Zinc regulated enzymes,locus|B878_12098,*
,NA,NA,NA,gi|444240197,NA,NA,3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4),Valine degradation,locus|B878_11403,*
,NA,NA,NA,gi|444240299,NA,NA,FIG008480: hypothetical protein,- none -,locus|B878_10936,*
,NA,NA,NA,gi|444240448,NA,ko:K01322,Prolyl endopeptidase (EC 3.4.21.26),EC 3.4.21.- Serine endopeptidase,locus|B878_10262,*
,NA,NA,NA,gi|444240525,pcnB,ko:K00970,Poly(A) polymerase (EC 2.7.7.19),Polyadenylation bacterial,locus|B878_09712,*
,NA,NA,NA,gi|444240554,epd,ko:K03472,D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72),Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_09392,*
,NA,NA,NA,gi|444240970,NA,NA,"Two-component transcriptional response regulator, LuxR family",- none -,locus|B878_07435,*
,NA,NA,NA,gi|444241029,gcvH,ko:K02437,Glycine cleavage system H protein,Glycine and Serine Utilization;
Glycine cleavage system,locus|B878_07095,*
,NA,NA,NA,gi|444241122,ybeD,ko:K09158,Proposed lipoate regulatory protein YbeD,Lipoic acid metabolism,locus|B878_06918,*
,NA,NA,NA,gi|444241136,ybeZ,ko:K06217,"Phosphate starvation-inducible protein PhoH, predicted ATPase",CBSS-56780.10.peg.1536;
Phosphate metabolism,locus|B878_06988,*
,NA,NA,NA,gi|444241137,miaB,ko:K06168,tRNA-i(6)A37 methylthiotransferase,Methylthiotransferases;
Ribosomal protein S12p Asp methylthiotransferase;
tRNA modification Archaea;
tRNA processing,locus|B878_06993,*
,NA,NA,NA,gi|444241856,NA,ko:K05777,"ABC transporter, periplasmic substrate-binding protein YnjB",- none -,locus|B878_03106,*
,NA,NA,NA,gi|444237890,NA,ko:K03762,L-Proline/Glycine betaine transporter ProP,"Proline, 4-hydroxyproline uptake and utilization",locus|B878_22832,*
,NA,NA,NA,gi|444238054,minD,ko:K03609,Septum site-determining protein MinD,Bacterial Cell Division;
Bacterial Cytoskeleton,locus|B878_22037,*
,NA,NA,NA,gi|444240820,NA,NA,Possible monoamine oxidase,- none -,locus|B878_08505,*
,NA,NA,NA,gi|444240990,NA,NA,FIG01199761: hypothetical protein,- none -,locus|B878_07535,*
,NA,NA,NA,gi|444241121,lipB,ko:K03801,Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase (EC 2.3.1.181),Lipoic acid metabolism,locus|B878_06913,*
,NA,NA,NA,gi|444241979,hflD,ko:K07153,High frequency lysogenization protein HflD,- none -,locus|B878_01986,*
,NA,NA,NA,gi|444237633,napA,ko:K02567,Periplasmic nitrate reductase precursor (EC 1.7.99.4),Nitrate and nitrite ammonification,locus|B878_23993,*
,NA,NA,NA,gi|444237880,NA,ko:K18136,"Transcriptional regulator, TetR family",- none -,locus|B878_22862,*
,NA,NA,NA,gi|444237906,dusA,ko:K05539,tRNA dihydrouridine synthase A,- none -,locus|B878_22757,*
,NA,NA,NA,gi|444237950,flaA,ko:K02406,Flagellin protein FlaC,Flagellum,locus|B878_22577,*
,NA,NA,NA,gi|444238148,uvrA,ko:K03701,Excinuclease ABC subunit A,"DNA repair, UvrABC system",locus|B878_21538,*
,NA,NA,NA,gi|444238261,ftsY,ko:K03110,Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1),Bacterial Cell Division;
Universal GTPases,locus|B878_20960,*
,NA,NA,NA,gi|444238369,NA,NA,N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43),CMP-N-acetylneuraminate Biosynthesis;
Sialic Acid Metabolism,locus|B878_20465,*
,NA,NA,NA,gi|444238751,NA,ko:K03310,Sodium/glycine symporter GlyP,- none -,locus|B878_18580,*
,NA,NA,NA,gi|444238931,NA,ko:K15580,"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_17766,*
,NA,NA,NA,gi|444238970,celC,ko:K02759,"PTS system, cellobiose-specific IIA component (EC 2.7.1.69)",Beta-Glucoside Metabolism,locus|B878_17469,*
,NA,NA,NA,gi|444239109,xthA,ko:K01142,Exodeoxyribonuclease III (EC 3.1.11.2),"DNA repair, bacterial",locus|B878_16840,*
,NA,NA,NA,gi|444239133,purN,ko:K11175,Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2),De Novo Purine Biosynthesis,locus|B878_16650,*
,NA,NA,NA,gi|444239582,NA,NA,Mll2374 protein,- none -,locus|B878_14345,*
,NA,NA,NA,gi|444239837,aroK,ko:K00891,Shikimate kinase I (EC 2.7.1.71),Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate);
Shikimate kinase containing cluster,locus|B878_13190,*
,NA,NA,NA,gi|444240261,NA,NA,GTPases - Sulfate adenylate transferase subunit 1,- none -,locus|B878_11258,*
,NA,NA,NA,gi|444240290,rlmB,ko:K03218,23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-),- none -,locus|B878_10891,*
,NA,NA,NA,gi|444240318,rpsL,ko:K02950,SSU ribosomal protein S12p (S23e),Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins);
Ribosomal protein S12p Asp methylthiotransferase;
Ribosome SSU bacterial,locus|B878_11031,*
,NA,NA,NA,gi|444240692,udk,ko:K00876,Uridine kinase (EC 2.7.1.48),pyrimidine conversions,locus|B878_09040,*
,NA,NA,NA,gi|444240701,yceD,ko:K07040,"FIG01269488: protein, clustered with ribosomal protein L32p",- none -,locus|B878_09085,*
,NA,NA,NA,gi|444240728,NA,NA,Isopenicillin N synthase,- none -,locus|B878_08635,*
,NA,NA,NA,gi|444240894,NA,NA,FIGfam020323,- none -,locus|B878_07645,*
,NA,NA,NA,gi|444241080,frsA,ko:K11750,FIG01200175: hypothetical protein,- none -,locus|B878_06698,*
,NA,NA,NA,gi|444241541,vibA,ko:K00216,"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)",- none -,locus|B878_04886,*
,NA,NA,NA,gi|444241804,NA,ko:K09918,"DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS",- none -,locus|B878_03696,*
,NA,NA,NA,gi|444242028,NA,NA,FIG01202273: hypothetical protein,- none -,locus|B878_02231,*
,NA,NA,NA,gi|444242355,NA,NA,FOG: CheY-like receiver,- none -,locus|B878_00365,*
,,,,,,,,,,
,,,,,,,,,,
,,,,,,,,,,
,,,,,,,,,,
,,,,,,,,,,
PROTEINS DETECTED IN FEWER THAN 13/18 SAMPLES AND NO SIG C N DIFFERENCES,,,,,,,,,,
,NA,NA,NA,gi|444237845,NA,ko:K07014,FIG001881: hydrolase of alkaline phosphatase superfamily,- none -,locus|B878_23006,
,NA,NA,NA,gi|444239761,dnaA,ko:K02313,Chromosomal replication initiator protein DnaA,Cell Division Subsystem including YidCD;
DNA-replication,locus|B878_13650,
,NA,NA,NA,gi|444240678,NA,ko:K09899,FIG01199944: hypothetical protein,- none -,locus|B878_08970,
,NA,NA,NA,gi|444241227,ycbK,NA,FIG001587: exported protein,- none -,locus|B878_06128,
,NA,NA,NA,gi|444241316,secG,ko:K03075,Preprotein translocase subunit SecG (TC 3.A.5.1.1),Murein hydrolase regulation and cell death,locus|B878_05914,
,NA,NA,NA,gi|444242375,paI,NA,Outer membrane protein SypB,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00465,
,NA,NA,NA,gi|444242436,ccoP,ko:K00406,Cytochrome c oxidase subunit CcoP (EC 1.9.3.1),Terminal cytochrome C oxidases,locus|B878_00780,
,NA,NA,NA,gi|444237885,NA,NA,probable peptidase VC1983,- none -,locus|B878_22807,
,NA,NA,NA,gi|444238123,gppA,ko:K01524,"Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (EC 3.6.1.40)","Phosphate metabolism;
Stringent Response, (p)ppGpp metabolism",locus|B878_21697,
,NA,NA,NA,gi|444238323,ilvG,ko:K01652,Acetolactate synthase large subunit (EC 2.2.1.6),Branched-Chain Amino Acid Biosynthesis,locus|B878_20765,
,NA,NA,NA,gi|444238350,aroE,ko:K00014,Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25),CBSS-281090.3.peg.464;
Chorismate Synthesis;
Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate),locus|B878_20545,
,NA,NA,NA,gi|444238354,purK,ko:K01589,Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21),De Novo Purine Biosynthesis,locus|B878_20565,
,NA,NA,NA,gi|444238359,def,ko:K01462,Peptide deformylase (EC 3.5.1.88),Bacterial RNA-metabolizing Zn-dependent hydrolases;
CBSS-89187.3.peg.2957;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Translation termination factors bacterial,locus|B878_20590,
,NA,NA,NA,gi|444238807,ligA,ko:K01972,DNA ligase (EC 6.5.1.2),DNA Repair Base Excision,locus|B878_18408,
,NA,NA,NA,gi|444238859,NA,ko:K01493,dCMP deaminase (EC 3.5.4.12),- none -,locus|B878_18158,
,NA,NA,NA,gi|444238987,pyrB,ko:K00609,Aspartate carbamoyltransferase (EC 2.1.3.2),CBSS-320372.3.peg.6046;
De Novo Pyrimidine Synthesis,locus|B878_17554,
,NA,NA,NA,gi|444239193,NA,NA,Sulfate permease,Cysteine Biosynthesis,locus|B878_16340,
,NA,NA,NA,gi|444239357,NA,NA,Permease of the major facilitator superfamily,- none -,locus|B878_15690,
,NA,NA,NA,gi|444239740,atpC,ko:K02114,ATP synthase epsilon chain (EC 7.1.2.2),F0F1-type ATP synthase,locus|B878_13535,
,NA,NA,NA,gi|444239815,topA,ko:K03168,DNA topoisomerase I (EC 5.99.1.2),Conserved gene cluster associated with Met-tRNA formyltransferase,locus|B878_13495,
,NA,NA,NA,gi|444240277,amiB,ko:K01448,N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28),Murein Hydrolases;
Recycling of Peptidoglycan Amino Acids;
Zinc regulated enzymes,locus|B878_10826,
,NA,NA,NA,gi|444240527,dksA,ko:K06204,RNA polymerase-binding transcription factor DksA,Zinc regulated enzymes,locus|B878_09722,
,NA,NA,NA,gi|444241249,nspC,ko:K13747,carboxynorspermidine decarboxylase,- none -,locus|B878_06238,
,NA,NA,NA,gi|444241266,trpD,ko:K00766,Anthranilate phosphoribosyltransferase (EC 2.4.2.18),Tryptophan synthesis,locus|B878_06323,
,NA,NA,NA,gi|444237914,motY,ko:K21218,Sodium-type flagellar protein motY precursor,- none -,locus|B878_22687,
,NA,NA,NA,gi|444239348,VP2977,ko:K08985,FIG028593: membrane protein,- none -,locus|B878_15645,
,NA,NA,NA,gi|444239358,NA,NA,"Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component",- none -,locus|B878_15695,
,NA,NA,NA,gi|444240111,gdhB,ko:K15371,"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form","Glutamate dehydrogenases;
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis",locus|B878_11778,
,NA,NA,NA,gi|444240392,NA,ko:K09859,putative lipoprotein,- none -,locus|B878_10472,
,NA,NA,NA,gi|444240686,dsbB,ko:K03611,"Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation",Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange,locus|B878_09010,
,NA,NA,NA,gi|444240845,fliL,ko:K02415,Flagellar biosynthesis protein FliL,Flagellum,locus|B878_08010,
,NA,NA,NA,gi|444240869,ccmE,ko:K02197,"Cytochrome c-type biogenesis protein CcmE, heme chaperone",Biogenesis of c-type cytochromes,locus|B878_08130,
,NA,NA,NA,gi|444240986,NA,NA,Uncharacterized low-complexity protein,- none -,locus|B878_07515,
,NA,NA,NA,gi|444241164,NA,NA,Putative stomatin/prohibitin-family membrane protease subunit aq_911,- none -,locus|B878_06491,
,NA,NA,NA,gi|444241396,NA,ko:K03561,MotA/TolQ/ExbB proton channel family protein,Ton and Tol transport systems,locus|B878_05622,
,NA,NA,NA,gi|444241655,pip,NA,Proline iminopeptidase (EC 3.4.11.5),"EC 3.4.11.- Aminopeptidases;
Proline, 4-hydroxyproline uptake and utilization",locus|B878_03831,
,NA,NA,NA,gi|444241779,VV2594,ko:K07286,Hypothetical lipoprotein YajG precursor,- none -,locus|B878_03571,
,NA,NA,NA,gi|444241940,epsN,ko:K02463,General secretion pathway protein N,General Secretion Pathway,locus|B878_02691,
,NA,NA,NA,gi|444242110,lpoA,ko:K07121,LppC putative lipoprotein,CBSS-160492.1.peg.550,locus|B878_01689,
,NA,NA,NA,gi|444242113,NA,NA,21 kDa hemolysin precursor,CBSS-160492.1.peg.550,locus|B878_01704,
,NA,NA,NA,gi|444237788,NA,ko:K06377,putative SpoOM-related protein,- none -,locus|B878_23263,
,NA,NA,NA,gi|444237810,pssA,ko:K00998,CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8),Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_23218,
,NA,NA,NA,gi|444237907,zur,ko:K09823,Zinc uptake regulation protein ZUR,Oxidative stress;
Zinc regulated enzymes,locus|B878_22762,
,NA,NA,NA,gi|444238274,sthA,ko:K00322,Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1),Phosphate metabolism,locus|B878_21025,
,NA,NA,NA,gi|444238522,nagC,ko:K02565,"N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family",Chitin and N-acetylglucosamine utilization,locus|B878_19850,
,NA,NA,NA,gi|444238556,yciI,ko:K09780,YciL protein,Broadly distributed proteins not in subsystems,locus|B878_19655,
,NA,NA,NA,gi|444238657,rsmE,ko:K09761,Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-),Heat shock dnaK gene cluster extended,locus|B878_19070,
,NA,NA,NA,gi|444239002,NA,ko:K19693,"DNA-binding response regulator, AraC family",- none -,locus|B878_17379,
,NA,NA,NA,gi|444239017,tas,NA,"Putative oxidoreductase YeaE, aldo/keto reductase family",- none -,locus|B878_17194,
,NA,NA,NA,gi|444239029,srmB,ko:K05590,ATP-dependent RNA helicase SrmB,"ATP-dependent RNA helicases, bacterial",locus|B878_17254,
,NA,NA,NA,gi|444239036,grcA,ko:K06866,Autonomous glycyl radical cofactor GrcA,Butanol Biosynthesis;
Fermentations: Mixed acid,locus|B878_17289,
,NA,NA,NA,gi|444239391,yciK,NA,Putative oxidoreductase,- none -,locus|B878_15530,
,NA,NA,NA,gi|444239454,SO2241,NA,FIG01200393: hypothetical protein,- none -,locus|B878_15215,
,NA,NA,NA,gi|444239495,NA,NA,"Transcriptional regulator, ArsR family",- none -,locus|B878_14860,
,NA,NA,NA,gi|444239537,torS,ko:K07647,Sensor protein torS (EC 2.7.3.-),- none -,locus|B878_14785,
,NA,NA,NA,gi|444239665,NA,NA,hypothetical protein,- none -,locus|B878_13945,
,NA,NA,NA,gi|444239935,hscB,ko:K04082,Chaperone protein HscB,Protein chaperones,locus|B878_12870,
,NA,NA,NA,gi|444240166,NA,NA,FIG01200959: hypothetical protein,- none -,locus|B878_11663,
,NA,NA,NA,gi|444240760,NA,NA,FIG00556979: hypothetical protein,- none -,locus|B878_08825,
,NA,NA,NA,gi|444240823,NA,NA,Gll3595 protein,- none -,locus|B878_08520,
,NA,NA,NA,gi|444240834,flrA,ko:K10941,Flagellar regulatory protein FleQ,Flagellum,locus|B878_07955,
,NA,NA,NA,gi|444240911,acnA,ko:K20455,Aconitate hydratase (EC 4.2.1.3),Methylcitrate cycle,locus|B878_07730,
,NA,NA,NA,gi|444240955,prmA,ko:K02687,Ribosomal protein L11 methyltransferase (EC 2.1.1.-),Heat shock dnaK gene cluster extended;
Ribosome biogenesis bacterial,locus|B878_07360,
,NA,NA,NA,gi|444241014,NA,NA,Transposase,- none -,locus|B878_07020,
,NA,NA,NA,gi|444241261,yciO,NA,"YciO protein, TsaC/YrdC paralog",YrdC-YciO;
YrdC-YciO-Sua5 and associated protein families,locus|B878_06298,
,NA,NA,NA,gi|444241417,NA,ko:K01674,Carbonic anhydrase (EC 4.2.1.1),Zinc regulated enzymes,locus|B878_04977,
,NA,NA,NA,gi|444241823,hexR,ko:K19337,"Phosphogluconate repressor HexR, RpiR family",- none -,locus|B878_02941,
,NA,NA,NA,gi|444242172,VV3022,NA,FIG01201392: hypothetical protein,- none -,locus|B878_00914,
,NA,NA,NA,gi|444242266,leuD,ko:K01704,3-isopropylmalate dehydratase small subunit (EC 4.2.1.33),Branched-Chain Amino Acid Biosynthesis;
Leucine Biosynthesis,locus|B878_01404,
,NA,NA,NA,gi|444242290,NA,NA,FIG01201788: hypothetical protein,- none -,locus|B878_00040,
,NA,NA,NA,gi|444237860,VP2042,NA,FIG01200153: hypothetical protein,- none -,locus|B878_22996,
,NA,NA,NA,gi|444237904,SO3905,NA,"ABC-type Fe3+-hydroxamate transport system, periplasmic component",- none -,locus|B878_22747,
,NA,NA,NA,gi|444238389,mlaD,ko:K02067,"Uncharacterized ABC transporter, periplasmic component YrbD",Lipopolysaccharide assembly,locus|B878_20370,
,NA,NA,NA,gi|444238539,NA,ko:K14645,Alkaline serine protease,- none -,locus|B878_19750,
,NA,NA,NA,gi|444238939,VPA1752,NA,Chromosome (plasmid) partitioning protein ParA,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_17806,
,NA,NA,NA,gi|444239848,argH,ko:K14681,argininosuccinate lyase( EC:4.3.2.1 ),- none -,locus|B878_13255,
,NA,NA,NA,gi|444240216,deaD,ko:K05592,DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13),"ATP-dependent RNA helicases, bacterial",locus|B878_11508,
,NA,NA,NA,gi|444240417,NA,ko:K03451,High-affinity choline uptake protein BetT,Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_10107,
,NA,NA,NA,gi|444241471,NA,NA,hypothetical protein,- none -,locus|B878_05257,
,NA,NA,NA,gi|444241749,NA,NA,FIG01199667: hypothetical protein,- none -,locus|B878_03421,
,NA,NA,NA,gi|444241947,yhgF,ko:K06959,Transcription accessory protein (S1 RNA-binding domain),CBSS-243265.1.peg.198;
Cell division-ribosomal stress proteins cluster,locus|B878_02726,
,NA,NA,NA,gi|444241956,spoT,ko:K01139,"GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)","CBSS-176299.4.peg.1292;
CBSS-176299.4.peg.1292;
Stringent Response, (p)ppGpp metabolism;
Stringent Response, (p)ppGpp metabolism",locus|B878_02771,
,NA,NA,NA,gi|444242246,NA,NA,"TRAP-type uncharacterized transport system, fused permease component",CBSS-49338.1.peg.459,locus|B878_01304,
,NA,NA,NA,gi|444242313,NA,NA,Proteorhodopsin,Proteorhodopsin,locus|B878_00155,
,NA,NA,NA,gi|444237623,rsgA,ko:K06949,Ribosome small subunit-stimulated GTPase EngC,Universal GTPases,locus|B878_24015,
,NA,NA,NA,gi|444237683,rapA,ko:K03580,RNA polymerase associated protein RapA (EC 3.6.1.-),EC49-61,locus|B878_23778,
,NA,NA,NA,gi|444237743,NA,ko:K11206,FIG003879: Predicted amidohydrolase / Nit family,CBSS-354.1.peg.2917,locus|B878_23498,
,NA,NA,NA,gi|444237770,NA,NA,hypothetical protein,- none -,locus|B878_23408,
,NA,NA,NA,gi|444237847,ndpA,ko:K06899,Nucleoid-associated protein NdpA,- none -,locus|B878_23016,
,NA,NA,NA,gi|444238047,tsaB,ko:K14742,"TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA",Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribosome biogenesis bacterial;
YgjD and YeaZ;
YjeE;
YrdC-YciO;
YrdC-YciO-Sua5 and associated protein families,locus|B878_22002,
,NA,NA,NA,gi|444238099,pdxH,ko:K00275,Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5),Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_21852,
,NA,NA,NA,gi|444238379,NA,NA,YjbG polysaccharide synthesis-related protein,- none -,locus|B878_20515,
,NA,NA,NA,gi|444238397,rpoN,ko:K03092,RNA polymerase sigma-54 factor RpoN,"Flagellar motility;
Flagellum;
Transcription initiation, bacterial sigma factors",locus|B878_20410,
,NA,NA,NA,gi|444238744,NA,ko:K07023,Predicted hydrolase,- none -,locus|B878_18760,
,NA,NA,NA,gi|444238817,NA,ko:K01990,"Efflux ABC transporter, ATP-binding protein",- none -,locus|B878_18213,
,NA,NA,NA,gi|444238873,copG,NA,CopG protein,Copper homeostasis,locus|B878_17946,
,NA,NA,NA,gi|444238935,NA,ko:K00638,Acetyltransferase,- none -,locus|B878_17786,
,NA,NA,NA,gi|444239144,bcp,ko:K03564,"Thiol peroxidase, Bcp-type (EC 1.11.1.15)",CBSS-316057.3.peg.3521;
Thioredoxin-disulfide reductase,locus|B878_16705,
,NA,NA,NA,gi|444239245,rng,ko:K08301,Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-),"Bacterial Cell Division;
CBSS-354.1.peg.2917;
RNA processing and degradation, bacterial",locus|B878_16055,
,NA,NA,NA,gi|444239467,himA,ko:K04764,Integration host factor alpha subunit,"DNA structural proteins, bacterial",locus|B878_15010,
,NA,NA,NA,gi|444239550,thyA,ko:K00560,Thymidylate synthase (EC 2.1.1.45),Folate Biosynthesis;
pyrimidine conversions,locus|B878_14560,
,NA,NA,NA,gi|444239813,glgC,ko:K00975,Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27),Glycogen metabolism,locus|B878_13485,
,NA,NA,NA,gi|444240054,hcp,ko:K11903,T6SS component Hcp,- none -,locus|B878_12300,
,NA,NA,NA,gi|444240202,liuA,ko:K00253,Isovaleryl-CoA dehydrogenase (EC 1.3.99.10),- none -,locus|B878_11428,
,NA,NA,NA,gi|444240217,rnb,ko:K01147,Exoribonuclease II (EC 3.1.13.1),"RNA processing and degradation, bacterial",locus|B878_11513,
,NA,NA,NA,gi|444240314,yheO,NA,YheO-like PAS domain,- none -,locus|B878_11011,
,NA,NA,NA,gi|444241414,lldD,ko:K00101,L-lactate dehydrogenase (EC 1.1.2.3),Lactate utilization;
Respiratory dehydrogenases 1,locus|B878_04962,
,NA,NA,NA,gi|444241591,NA,NA,FIG01199668: hypothetical protein,- none -,locus|B878_04391,
,NA,NA,NA,gi|444242251,ispB,ko:K02523,Octaprenyl diphosphate synthase (EC 2.5.1.90),Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Proteorhodopsin,locus|B878_01329,
,NA,NA,NA,gi|444242336,NA,NA,Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3),Biotin biosynthesis,locus|B878_00270,
,NA,NA,NA,gi|444237622,psd,ko:K01613,NA,NA,NA,
,NA,NA,NA,gi|444237912,NA,ko:K07084,Histidine permease YuiF,- none -,locus|B878_22677,
,NA,NA,NA,gi|444238186,VPA1172,NA,FIG01202162: hypothetical protein,- none -,locus|B878_21334,
,NA,NA,NA,gi|444239262,mshL,ko:K12282,MSHA biogenesis protein MshL,Mannose-sensitive hemagglutinin type 4 pilus,locus|B878_16140,
,NA,NA,NA,gi|444239323,torC,ko:K03532,Cytochrome c-type protein NapC,Nitrate and nitrite ammonification,locus|B878_15860,
,NA,NA,NA,gi|444239884,NA,NA,FIG01200881: hypothetical protein,- none -,locus|B878_13025,
,NA,NA,NA,gi|444240097,NA,NA,ATP-dependent RNA helicase VVA0939,"ATP-dependent RNA helicases, bacterial",locus|B878_12108,
,NA,NA,NA,gi|444240340,blc,ko:K03098,lipoprotein Blc,- none -,locus|B878_10652,
,NA,NA,NA,gi|444240391,NA,NA,YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster,- none -,locus|B878_10467,
,NA,NA,NA,gi|444242075,NA,NA,Sensory box/GGDEF family protein,- none -,locus|B878_01514,
,NA,NA,NA,gi|444242137,pitA,ko:K03306,Probable low-affinity inorganic phosphate transporter,Phosphate metabolism,locus|B878_01844,
,NA,NA,NA,gi|444237976,ahpC,ko:K03386,Alkyl hydroperoxide reductase protein C (EC 1.11.1.15),Thioredoxin-disulfide reductase,locus|B878_22367,
,NA,NA,NA,gi|444238361,rsmB,ko:K03500,16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967,- none -,locus|B878_20600,
,NA,NA,NA,gi|444238366,spoOM,ko:K06377,Hypothetical Transcriptional Regulator,- none -,locus|B878_20625,
,NA,NA,NA,gi|444238537,NA,NA,conserved hypothetical protein,- none -,locus|B878_19740,
,NA,NA,NA,gi|444238565,NA,NA,Isochorismatase (EC 3.3.2.1),- none -,locus|B878_19515,
,NA,NA,NA,gi|444238634,NA,NA,hypothetical protein,- none -,locus|B878_19215,
,NA,NA,NA,gi|444238782,nadA,ko:K03517,Quinolinate synthetase (EC 2.5.1.72),Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global,locus|B878_18523,
,NA,NA,NA,gi|444238829,NA,NA,Phenazine biosynthesis protein PhzF like,- none -,locus|B878_18273,
,NA,NA,NA,gi|444238863,narP,ko:K07685,Nitrate/nitrite response regulator protein,Nitrate and nitrite ammonification,locus|B878_18178,
,NA,NA,NA,gi|444239022,prfB,ko:K02836,Peptide chain release factor 2; programmed frameshift-containing,Programmed frameshift;
Programmed frameshift;
Translation termination factors bacterial,locus|B878_17219,
,NA,NA,NA,gi|444239118,cspD,ko:K03704,Cold shock protein CspD,"Cold shock, CspA family of proteins",locus|B878_16885,
,NA,NA,NA,gi|444239157,flaE,ko:K02406,Flagellin protein FlaF,Flagellum,locus|B878_16770,
,NA,NA,NA,gi|444239464,purT,ko:K08289,Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-),De Novo Purine Biosynthesis,locus|B878_14995,
,NA,NA,NA,gi|444239610,NA,ko:K01963,Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2),Colicin V and Bacteriocin Production Cluster;
EC 6.4.1.- Ligases that form carbon-carbon bonds;
Fatty Acid Biosynthesis FASII,locus|B878_14485,
,NA,NA,NA,gi|444239851,argC,ko:K00145,N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38),Arginine Biosynthesis extended,locus|B878_13270,
,NA,NA,NA,gi|444239901,NA,NA,FIG01206884: hypothetical protein,- none -,locus|B878_13110,
,NA,NA,NA,gi|444240060,dps,ko:K04047,Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1),Oxidative stress;
Oxidative stress;
Oxidative stress,locus|B878_11923,
,NA,NA,NA,gi|444240137,rlmI,ko:K06969,LSU m5C1962 methyltransferase RlmI,Ribosome biogenesis bacterial,locus|B878_11908,
,NA,NA,NA,gi|444240167,NA,NA,Aspartate aminotransferase (AspB-4) (EC 2.6.1.1),- none -,locus|B878_11668,
,NA,NA,NA,gi|444240385,pgs1,NA,FIG01200265: hypothetical protein,- none -,locus|B878_10437,
,NA,NA,NA,gi|444240506,NA,NA,FIG01202401: hypothetical protein,- none -,locus|B878_10052,
,NA,NA,NA,gi|444240548,NA,ko:K02035,"(GlcNAc)2 ABC transporter, periplasmic substrate-binding protein",(GlcNAc)2 Catabolic Operon,locus|B878_09827,
,NA,NA,NA,gi|444240632,NA,ko:K09796,"Copper metallochaperone, bacterial analog of Cox17 protein",Biogenesis of cytochrome c oxidases,locus|B878_09262,
,NA,NA,NA,gi|444240683,NA,ko:K20955,GGDEF family protein,- none -,locus|B878_08995,
,NA,NA,NA,gi|444240857,cheY,ko:K03413,Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY,Bacterial Chemotaxis;
Flagellar motility,locus|B878_08070,
,NA,NA,NA,gi|444240913,prpB,"ko:K01841,ko:K03417",Methylisocitrate lyase (EC 4.1.3.30),Methylcitrate cycle,locus|B878_07740,
,NA,NA,NA,gi|444241389,DR1793,NA,FIG019993: putative exported protein,- none -,locus|B878_05587,
,NA,NA,NA,gi|444241588,NA,NA,cytosolic long-chain acyl-CoA thioester hydrolase family protein,Serine-glyoxylate cycle,locus|B878_04376,
,NA,NA,NA,gi|444241650,NA,ko:K07146,Rhodanese domain protein UPF0176,- none -,locus|B878_03806,
,NA,NA,NA,gi|444241720,gloB,ko:K01069,Hydroxyacylglutathione hydrolase (EC 3.1.2.6),CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
Glutathione: Non-redox reactions;
Methylglyoxal Metabolism,locus|B878_03276,
,NA,NA,NA,gi|444241761,BT4646,NA,FIG01200459: hypothetical protein,- none -,locus|B878_03481,
,NA,NA,NA,gi|444242081,NA,NA,FIG01199686: hypothetical protein,- none -,locus|B878_01544,
,NA,NA,NA,gi|444242109,rsmI,ko:K07056,16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) ## RsmI,CBSS-160492.1.peg.550;
Heat shock dnaK gene cluster extended,locus|B878_01684,
,NA,NA,NA,gi|444242337,NA,ko:K03530,NA,NA,NA,
,NA,NA,NA,gi|444237913,rnt,ko:K03683,Ribonuclease T,tRNA processing,locus|B878_22682,
,NA,NA,NA,gi|444238384,plsC,ko:K00655,1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51),Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Phosphate metabolism,locus|B878_20345,
,NA,NA,NA,gi|444238436,NA,NA,Membrane fusion component of tripartite multidrug resistance system,- none -,locus|B878_20210,
,NA,NA,NA,gi|444238528,NA,NA,MoxR-like ATPase,- none -,locus|B878_19695,
,NA,NA,NA,gi|444239046,NA,ko:K08303,Uncharacterized protease YegQ,- none -,locus|B878_17070,
,NA,NA,NA,gi|444239558,lspA,ko:K03101,Lipoprotein signal peptidase (EC 3.4.23.36),Lipoprotein Biosynthesis;
Signal peptidase,locus|B878_14600,
,NA,NA,NA,gi|444239624,NA,NA,Zona occludens toxin,- none -,locus|B878_14135,
,NA,NA,NA,gi|444239729,NA,NA,hypothetical protein,- none -,locus|B878_13900,
,NA,NA,NA,gi|444239835,VP2743,ko:K03112,"DamX, an inner membrane protein involved in bile resistance",Shikimate kinase containing cluster,locus|B878_13180,
,NA,NA,NA,gi|444240016,malT,ko:K03556,"Transcriptional activator of maltose regulon, MalT",Maltose and Maltodextrin Utilization,locus|B878_12460,
,NA,NA,NA,gi|444240071,NA,NA,hypothetical protein,- none -,locus|B878_11978,
,NA,NA,NA,gi|444240120,NA,NA,Paraquat-inducible protein B,Oxidative stress,locus|B878_11823,
,NA,NA,NA,gi|444240381,lolD,ko:K09810,Lipoprotein releasing system ATP-binding protein LolD,Lipopolysaccharide assembly;
Lipoprotein sorting system,locus|B878_10417,
,NA,NA,NA,gi|444240971,dsbD,ko:K04084,"Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)",Biogenesis of c-type cytochromes;
Periplasmic disulfide interchange,locus|B878_07440,
,NA,NA,NA,gi|444241127,rlmH,ko:K00783,LSU m3Psi1915 methyltransferase RlmH,Ribosome biogenesis bacterial,locus|B878_06943,
,NA,NA,NA,gi|444241303,NA,NA,FIG138517: Putative lipid carrier protein,- none -,locus|B878_05839,
,NA,NA,NA,gi|444241315,rimP,ko:K09748,FIG000325: clustered with transcription termination protein NusA,NusA-TFII Cluster;
Transcription factors bacterial,locus|B878_05909,
,NA,NA,NA,gi|444241630,NA,NA,Probable MFS transporter,- none -,locus|B878_04586,
,NA,NA,NA,gi|444241929,epsC,ko:K02452,General secretion pathway protein C,General Secretion Pathway,locus|B878_02636,
,NA,NA,NA,gi|444237800,NA,NA,"Transcriptional regulator, TetR family",- none -,locus|B878_23243,
,NA,NA,NA,gi|444237801,NA,NA,FIG01199919: hypothetical protein,- none -,locus|B878_23248,
,NA,NA,NA,gi|444238051,fadD,ko:K01897,Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3),Biotin biosynthesis,locus|B878_22022,
,NA,NA,NA,gi|444238110,NA,ko:K03924,MoxR-like ATPase in aerotolerance operon,CBSS-345072.3.peg.1318,locus|B878_21762,
,NA,NA,NA,gi|444238212,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238233,ispE,ko:K00919,4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148),A Gammaproteobacteria Cluster Relating to Translation;
Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis,locus|B878_21115,
,NA,NA,NA,gi|444238267,NA,ko:K02415,Flagellar biosynthesis protein FliL,Flagellum,locus|B878_20990,
,NA,NA,NA,gi|444238309,kdtA,ko:K02527,Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also],LOS core oligosaccharide biosynthesis;
Vibrio Core Oligosaccharide Biosynthesis,locus|B878_20875,
,NA,NA,NA,gi|444238456,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239078,ffh,ko:K03106,Signal recognition particle protein Ffh,Universal GTPases,locus|B878_16960,
,NA,NA,NA,gi|444239289,nadK,ko:K00858,NAD kinase (EC 2.7.1.23),NAD and NADP cofactor biosynthesis global,locus|B878_15995,
,NA,NA,NA,gi|444239384,pyrF,ko:K01591,Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23),De Novo Pyrimidine Synthesis,locus|B878_15495,
,NA,NA,NA,gi|444239560,ispH,ko:K03527,4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2),Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis,locus|B878_14610,
,NA,NA,NA,gi|444239576,yjjX,NA,Inosine/xanthosine triphosphatase (EC 3.6.1.-); Hypothetical cytoplasmic protein in cluster with NspS,Housecleaning nucleoside triphosphate pyrophosphatases,locus|B878_14690,
,NA,NA,NA,gi|444239711,NA,NA,FIG01205087: hypothetical protein,- none -,locus|B878_13810,
,NA,NA,NA,gi|444239886,NA,ko:K01077,Alkaline phosphatase (EC 3.1.3.1),Phosphate metabolism,locus|B878_13035,
,NA,NA,NA,gi|444239940,trmJ,ko:K15396,tRNA:Cm32/Um32 methyltransferase,tRNA modification Archaea,locus|B878_12895,
,NA,NA,NA,gi|444240007,pdxY,ko:K00868,Pyridoxal kinase (EC 2.7.1.35),Pyridoxin (Vitamin B6) Biosynthesis,locus|B878_12415,
,NA,NA,NA,gi|444240229,NA,NA,"2-oxoglutarate dehydrogenase complex, dehydrogenase component",- none -,locus|B878_11098,
,NA,NA,NA,gi|444240350,dld,ko:K03777,D-Lactate dehydrogenase (EC 1.1.2.5),Lactate utilization;
Respiratory dehydrogenases 1,locus|B878_10702,
,NA,NA,NA,gi|444240366,fabH2,ko:K00648,"3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)",- none -,locus|B878_10782,
,NA,NA,NA,gi|444240529,hrpB,ko:K03579,ATP-dependent helicase HrpB,- none -,locus|B878_09732,
,NA,NA,NA,gi|444240625,etfA,ko:K03522,"Electron transfer flavoprotein, alpha subunit",Acetyl-CoA fermentation to Butyrate,locus|B878_09227,
,NA,NA,NA,gi|444240778,NA,ko:K02027,"ABC-type sugar transport system, periplasmic component",- none -,locus|B878_08285,
,NA,NA,NA,gi|444240877,EBIG1770,NA,FIG01199930: hypothetical protein,- none -,locus|B878_08170,
,NA,NA,NA,gi|444241053,glgC2,ko:K00975,Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27),Glycogen metabolism,locus|B878_07215,
,NA,NA,NA,gi|444241057,VV20220,NA,FIG01201362: hypothetical protein,- none -,locus|B878_07235,
,NA,NA,NA,gi|444241173,NA,NA,Predicted redox protein,- none -,locus|B878_06536,
,NA,NA,NA,gi|444241312,rbfA,ko:K02834,Ribosome-binding factor A,CBSS-138119.3.peg.2719;
NusA-TFII Cluster,locus|B878_05894,
,NA,NA,NA,gi|444241746,NA,NA,Chromosome segregation ATPase,- none -,locus|B878_03406,
,NA,NA,NA,gi|444241867,NA,ko:K03308,Putative sodium-dependent transporter,- none -,locus|B878_03171,
,NA,NA,NA,gi|444242124,parC,ko:K02621,Topoisomerase IV subunit A (EC 5.99.1.-),"DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones",locus|B878_01769,
,NA,NA,NA,gi|444242162,NA,NA,glycosyltransferase,- none -,locus|B878_00864,
,NA,NA,NA,gi|444242224,cysC,ko:K00860,Adenylylsulfate kinase (EC 2.7.1.25),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_01194,
,NA,NA,NA,gi|444237905,pspG,NA,Putative inner membrane protein,- none -,locus|B878_22752,
,NA,NA,NA,gi|444238826,NA,ko:K12373,Beta-hexosaminidase (EC 3.2.1.52),Chitin and N-acetylglucosamine utilization,locus|B878_18258,
,NA,NA,NA,gi|444239287,NA,NA,Proton/glutamate symport protein @ Sodium/glutamate symport protein,- none -,locus|B878_15985,
,NA,NA,NA,gi|444239394,dnaE2,ko:K14162,Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7),- none -,locus|B878_15545,
,NA,NA,NA,gi|444239607,NA,NA,DUF819 domain-containing protein,- none -,locus|B878_14470,
,NA,NA,NA,gi|444240075,NA,NA,Alkaline phosphatase (EC 3.1.3.1),Phosphate metabolism,locus|B878_11998,
,NA,NA,NA,gi|444240878,NA,ko:K03088,"RNA polymerase sigma-70 factor, ECF subfamily",- none -,locus|B878_08175,
,NA,NA,NA,gi|444241364,NA,ko:K07093,Putative phosphatase,- none -,locus|B878_05462,
,NA,NA,NA,gi|444241890,NA,NA,FIG01204155: hypothetical protein,- none -,locus|B878_02441,
,NA,NA,NA,gi|444241995,bioA,ko:K00833,Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62),Biotin biosynthesis,locus|B878_02066,
,NA,NA,NA,gi|444237542,NA,NA,hypothetical protein,- none -,locus|B878_24323,
,NA,NA,NA,gi|444237660,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237900,cysH,ko:K00390,Phosphoadenylyl-sulfate reductase (thioredoxin) (EC 1.8.4.8),Cysteine Biosynthesis;
Inorganic Sulfur Assimilation,locus|B878_22727,
,NA,NA,NA,gi|444237903,VV2968,NA,Thymidylate kinase,- none -,locus|B878_22742,
,NA,NA,NA,gi|444237948,flgK,ko:K02396,Flagellar hook-associated protein FlgK,Flagellum,locus|B878_22567,
,NA,NA,NA,gi|444237965,NA,NA,hypothetical protein,- none -,locus|B878_22447,
,NA,NA,NA,gi|444238068,glpQ,ko:K01126,Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46),Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_21977,
,NA,NA,NA,gi|444238169,NA,ko:K00657,Spermidine acetyltransferase,- none -,locus|B878_21528,
,NA,NA,NA,gi|444238216,rbgA,ko:K14540,50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF),Conserved gene cluster associated with Met-tRNA formyltransferase;
Universal GTPases,locus|B878_21259,
,NA,NA,NA,gi|444238505,pstB2,ko:K02036,Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1),High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_19940,
,NA,NA,NA,gi|444238641,NA,NA,hypothetical protein,- none -,locus|B878_19250,
,NA,NA,NA,gi|444238685,nnrD,"ko:K17758,ko:K17759",NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136),YjeE;
YjeE,locus|B878_18965,
,NA,NA,NA,gi|444238769,NA,NA,ATP-dependent DNA helicase pcrA (EC 3.6.1.-),"DNA repair, bacterial UvrD and related helicases",locus|B878_18458,
,NA,NA,NA,gi|444238770,NA,NA,hypothetical protein,- none -,locus|B878_18463,
,NA,NA,NA,gi|444239064,queA,ko:K07568,tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase (EC 2.4.99.17),- none -,locus|B878_17170,
,NA,NA,NA,gi|444239229,hemE,ko:K01599,Uroporphyrinogen III decarboxylase (EC 4.1.1.37),- none -,locus|B878_16250,
,NA,NA,NA,gi|444239325,galA,ko:K07407,Alpha-galactosidase,- none -,locus|B878_15870,
,NA,NA,NA,gi|444239387,himD,ko:K05788,Integration host factor beta subunit,"DNA structural proteins, bacterial",locus|B878_15510,
,NA,NA,NA,gi|444239413,eda,ko:K01625,4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14),Entner-Doudoroff Pathway,locus|B878_15320,
,NA,NA,NA,gi|444239443,NA,NA,HrpA-like helicase,- none -,locus|B878_15160,
,NA,NA,NA,gi|444239734,NA,NA,Chromosome (plasmid) partitioning protein ParA,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_13925,
,NA,NA,NA,gi|444239800,mukB,ko:K03632,Chromosome partition protein MukB,"DNA structural proteins, bacterial;
MukBEF Chromosome Condensation",locus|B878_13420,
,NA,NA,NA,gi|444239939,iscR,ko:K13643,Iron-sulfur cluster regulator IscR,At5g37530 (CsdL protein family);
Rrf2 family transcriptional regulators,locus|B878_12890,
,NA,NA,NA,gi|444239998,glgX,ko:K01214,Glycogen debranching enzyme (EC 3.2.1.-),Glycogen metabolism,locus|B878_12360,
,NA,NA,NA,gi|444240063,NA,ko:K21430,"PQQ-dependent oxidoreductase, gdhB family",- none -,locus|B878_11938,
,NA,NA,NA,gi|444240122,NA,ko:K00243,FIG01199643: hypothetical protein,- none -,locus|B878_11833,
,NA,NA,NA,gi|444240400,NA,ko:K07137,"NAD(FAD)-utilizing dehydrogenase, sll0175 homolog",- none -,locus|B878_10512,
,NA,NA,NA,gi|444240483,NA,NA,RND multidrug efflux transporter; Acriflavin resistance protein,Multidrug Resistance Efflux Pumps,locus|B878_09927,
,NA,NA,NA,gi|444240694,btuR,ko:K19221,Cob(I)alamin adenosyltransferase (EC 2.5.1.17),Cobalamin synthesis;
Coenzyme B12 biosynthesis,locus|B878_09050,
,NA,NA,NA,gi|444240879,fadI,ko:K00632,3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9),Acetyl-CoA fermentation to Butyrate;
Biotin biosynthesis;
Butanol Biosynthesis;
Butyrate metabolism cluster;
Isoleucine degradation;
Isoprenoid Biosynthesis;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Serine-glyoxylate cycle;
Serine-glyoxylate cycle,locus|B878_08180,
,NA,NA,NA,gi|444240881,ptrA,NA,Protease III precursor (EC 3.4.24.55),"DNA repair, bacterial RecBCD pathway",locus|B878_08190,
,NA,NA,NA,gi|444241027,NA,NA,putative acetyltransferase,- none -,locus|B878_07085,
,NA,NA,NA,gi|444241038,fruA,"ko:K02769,ko:K02770","PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)",- none -,locus|B878_07140,
,NA,NA,NA,gi|444241060,NA,ko:K03406,N-acetylglucosamine regulated methyl-accepting chemotaxis protein,Chitin and N-acetylglucosamine utilization,locus|B878_07250,
,NA,NA,NA,gi|444241318,folP,ko:K00796,Dihydropteroate synthase (EC 2.5.1.15),Folate Biosynthesis,locus|B878_05924,
,NA,NA,NA,gi|444241695,NA,"ko:K11201,ko:K11202,ko:K11203","PTS system, fructose-specific IIBC component (EC 2.7.1.69)",- none -,locus|B878_04051,
,NA,NA,NA,gi|444241777,bolA,ko:K05527,Cell division protein BolA,Bacterial Cell Division,locus|B878_03561,
,NA,NA,NA,gi|444241894,rmuC,ko:K09760,DNA recombination protein RmuC,"DNA repair, bacterial",locus|B878_02461,
,NA,NA,NA,gi|444242012,NA,ko:K00558,DNA-cytosine methyltransferase (EC 2.1.1.37),- none -,locus|B878_02151,
,NA,NA,NA,gi|444242117,petB,ko:K00412,"Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)",Ubiquinone Menaquinone-cytochrome c reductase complexes,locus|B878_01724,
,NA,NA,NA,gi|444242257,folA,ko:K00287,Dihydrofolate reductase (EC 1.5.1.3),EC49-61;
Folate Biosynthesis,locus|B878_01359,
,NA,NA,NA,gi|444238326,NA,NA,FIG01200359: hypothetical protein,- none -,locus|B878_20780,
,NA,NA,NA,gi|444238618,NA,NA,carboxyl-terminal protease,- none -,locus|B878_19380,
,NA,NA,NA,gi|444238921,lapC,ko:K12542,"ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE",- none -,locus|B878_17706,
,NA,NA,NA,gi|444239244,VV2929,NA,NA,NA,NA,
,NA,NA,NA,gi|444239499,NA,ko:K03406,Methyl-accepting chemotaxis protein,- none -,locus|B878_14880,
,NA,NA,NA,gi|444239796,NA,NA,FIG139976: hypothetical protein,- none -,locus|B878_13400,
,NA,NA,NA,gi|444239826,alr,ko:K01775,"Alanine racemase, biosynthetic (EC 5.1.1.1)",Alanine biosynthesis;
Pyruvate Alanine Serine Interconversions,locus|B878_13135,
,NA,NA,NA,gi|444240160,rhlE,ko:K11927,ATP-dependent RNA helicase RhlE,"ATP-dependent RNA helicases, bacterial",locus|B878_11633,
,NA,NA,NA,gi|444240294,NA,ko:K07004,Extracellular deoxyribonuclease Xds,Natural DNA Transformation in Vibrio,locus|B878_10911,
,NA,NA,NA,gi|444240352,NA,NA,FIG01200188: hypothetical protein,- none -,locus|B878_10712,
,NA,NA,NA,gi|444240626,pdhC,ko:K00627,Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168),Dehydrogenase complexes;
Isoleucine degradation;
Valine degradation,locus|B878_09232,
,NA,NA,NA,gi|444240689,NA,NA,FIG00919855: hypothetical protein,- none -,locus|B878_09025,
,NA,NA,NA,gi|444240695,NA,ko:K01104,Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48),LMPTP YfkJ cluster;
Vibrio Polysaccharide (VPS) Biosynthesis,locus|B878_09055,
,NA,NA,NA,gi|444241413,lldP,ko:K03303,L-lactate permease,Lactate utilization,locus|B878_04957,
,NA,NA,NA,gi|444241828,NA,NA,"Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)",Isoleucine degradation,locus|B878_02966,
,NA,NA,NA,gi|444242295,NA,ko:K08602,Oligoendopeptidase F,- none -,locus|B878_00065,
,NA,NA,NA,gi|444242430,uspE,ko:K14055,Universal stress protein UspA,- none -,locus|B878_00750,
,NA,NA,NA,gi|444237694,NA,NA,Nucleoside permease,- none -,locus|B878_23718,
,NA,NA,NA,gi|444237750,ybaB,ko:K09747,Nucleoid-associated protein YaaK,"DNA processing cluster;
DNA repair, bacterial RecFOR pathway",locus|B878_23473,
,NA,NA,NA,gi|444237777,NA,ko:K00656,Pyruvate formate-lyase (EC 2.3.1.54),Butanol Biosynthesis;
Fermentations: Mixed acid,locus|B878_23333,
,NA,NA,NA,gi|444237908,cheX,ko:K03409,Chemotaxis protein CheX,Bacterial Chemotaxis,locus|B878_22767,
,NA,NA,NA,gi|444237987,NA,ko:K03830,putative acetyltransferase [EC:2.3.1.-] [KO:K03830],- none -,locus|B878_22282,
,NA,NA,NA,gi|444238055,minC,ko:K03610,Septum site-determining protein MinC,Bacterial Cell Division;
Bacterial Cytoskeleton,locus|B878_22042,
,NA,NA,NA,gi|444238104,NA,NA,STRUCTURAL ELEMENTS; Cell Exterior; surface polysaccharides/antigens,- none -,locus|B878_21732,
,NA,NA,NA,gi|444238131,NA,ko:K02395,Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-),Flagellum,locus|B878_21582,
,NA,NA,NA,gi|444238371,NA,NA,4-amino-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) acetyltrasferase,N-linked Glycosylation in Bacteria,locus|B878_20475,
,NA,NA,NA,gi|444238443,yhhY,ko:K03825,Histone acetyltransferase HPA2,- none -,locus|B878_20245,
,NA,NA,NA,gi|444238553,metR,ko:K03576,Transcriptional activator MetR,Methionine Biosynthesis,locus|B878_19640,
,NA,NA,NA,gi|444238608,lpxL,ko:K02517,Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-),- none -,locus|B878_19330,
,NA,NA,NA,gi|444238672,trmB,ko:K03439,tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33),- none -,locus|B878_19145,
,NA,NA,NA,gi|444238745,VV12273,NA,FIG01200791: hypothetical protein,- none -,locus|B878_18765,
,NA,NA,NA,gi|444238781,VP1064,ko:K10716,Putative potassium channel protein,- none -,locus|B878_18518,
,NA,NA,NA,gi|444238783,cpoB,NA,TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain,Ton and Tol transport systems,locus|B878_18528,
,NA,NA,NA,gi|444238889,cheR,ko:K00575,Chemotaxis protein methyltransferase CheR (EC 2.1.1.80),Bacterial Chemotaxis,locus|B878_18026,
,NA,NA,NA,gi|444239161,NA,NA,FIG01199803: hypothetical protein,- none -,locus|B878_16465,
,NA,NA,NA,gi|444239268,NA,ko:K04333,"Transcriptional regulator, LuxR family",- none -,locus|B878_16170,
,NA,NA,NA,gi|444239374,NA,NA,FIG01201553: hypothetical protein,- none -,locus|B878_15435,
,NA,NA,NA,gi|444239457,SO4011,NA,FIG01199954: hypothetical protein,- none -,locus|B878_15230,
,NA,NA,NA,gi|444239766,avtA,ko:K00835,Valine--pyruvate aminotransferase (EC 2.6.1.66),Alanine biosynthesis;
Branched-Chain Amino Acid Biosynthesis;
Pyruvate Alanine Serine Interconversions,locus|B878_13675,
,NA,NA,NA,gi|444239966,gapA-2,ko:K00134,NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13),Glycolysis and Gluconeogenesis;
Redox-dependent regulation of nucleus processes,locus|B878_12590,
,NA,NA,NA,gi|444240185,NA,ko:K22187,Aldehyde dehydrogenase B (EC 1.2.1.22),Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Methylglyoxal Metabolism,locus|B878_11343,
,NA,NA,NA,gi|444240534,glnK,ko:K04752,Nitrogen regulatory protein P-II,Ammonia assimilation,locus|B878_09757,
,NA,NA,NA,gi|444240579,lepA,ko:K03596,Translation elongation factor LepA,Heat shock dnaK gene cluster extended;
Translation elongation factors bacterial;
Universal GTPases,locus|B878_09517,
,NA,NA,NA,gi|444240624,etfB,ko:K03521,"Electron transfer flavoprotein, beta subunit",Acetyl-CoA fermentation to Butyrate,locus|B878_09222,
,NA,NA,NA,gi|444240783,ppnP,ko:K09913,Uncharacterized protein conserved in bacteria,- none -,locus|B878_08310,
,NA,NA,NA,gi|444240859,cheA,ko:K03407,Signal transduction histidine kinase CheA (EC 2.7.3.-),Bacterial Chemotaxis;
Flagellar motility,locus|B878_08080,
,NA,NA,NA,gi|444241039,fruK,ko:K00882,1-phosphofructokinase (EC 2.7.1.56),- none -,locus|B878_07145,
,NA,NA,NA,gi|444241040,fruB,"ko:K02768,ko:K11183","Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69)",- none -,locus|B878_07150,
,NA,NA,NA,gi|444241199,vctC,ko:K02013,"Ferric vibriobactin, enterobactin transport system, ATP-binding protein (TC 3.A.1.14.6)",- none -,locus|B878_06666,
,NA,NA,NA,gi|444241254,sirA,ko:K07689,BarA-associated response regulator UvrY (= GacA = SirA),- none -,locus|B878_06263,
,NA,NA,NA,gi|444241363,NA,ko:K01223,6-phospho-beta-glucosidase (EC 3.2.1.86),Beta-Glucoside Metabolism,locus|B878_05457,
,NA,NA,NA,gi|444241714,proV,ko:K02000,"Betaine/L-proline ABC transporter, ATP-binding protein ProV (TC 3.A.1.12.1)",Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_04146,
,NA,NA,NA,gi|444241848,NA,NA,putative amino group acetyl transferase,- none -,locus|B878_03066,
,NA,NA,NA,gi|444241953,NA,NA,"Peptidase S9, prolyl oligopeptidase active site domain protein",- none -,locus|B878_02756,
,NA,NA,NA,gi|444241958,gmk,ko:K00942,Guanylate kinase (EC 2.7.4.8),CBSS-323097.3.peg.2594,locus|B878_02781,
,NA,NA,NA,gi|444242103,murF,ko:K01929,"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)",Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo,locus|B878_01654,
,NA,NA,NA,gi|444242181,cytR,ko:K05499,Transcriptional (co)regulator CytR,CytR regulation,locus|B878_00959,
,NA,NA,NA,gi|444238016,NA,NA,putative acetyltransferase,- none -,locus|B878_22122,
,NA,NA,NA,gi|444238329,NA,NA,"Outer membrane protein N, non-specific porin",- none -,locus|B878_20630,
,NA,NA,NA,gi|444238572,NA,NA,two-component system sensor protein,- none -,locus|B878_19550,
,NA,NA,NA,gi|444238577,VP1981,ko:K03406,Methyl-accepting chemotaxis protein,- none -,locus|B878_19575,
,NA,NA,NA,gi|444238803,NA,ko:K07340,Putative activity regulator of membrane protease YbbK,CBSS-316057.3.peg.659,locus|B878_18388,
,NA,NA,NA,gi|444238853,NA,NA,Thiol-disulfide isomerase,- none -,locus|B878_18128,
,NA,NA,NA,gi|444239065,tgt,ko:K00773,NA,NA,NA,
,NA,NA,NA,gi|444239098,yfbU,ko:K09161,FIG00920830: hypothetical protein,- none -,locus|B878_16785,
,NA,NA,NA,gi|444239517,ribN,NA,"Putative transporter, DME family",- none -,locus|B878_14970,
,NA,NA,NA,gi|444239563,cstA,NA,Carbon starvation protein A,Carbon Starvation,locus|B878_14625,
,NA,NA,NA,gi|444240005,NA,NA,"FOG: TPR repeat protein, SEL1 subfamily",- none -,locus|B878_12405,
,NA,NA,NA,gi|444240535,amtB,ko:K03320,Ammonium transporter,Ammonia assimilation,locus|B878_09762,
,NA,NA,NA,gi|444240664,ybhK,NA,"FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like",- none -,locus|B878_08900,
,NA,NA,NA,gi|444240720,NA,NA,Zn-dependent protease,- none -,locus|B878_08595,
,NA,NA,NA,gi|444240872,ccmH,ko:K02200,Cytochrome c heme lyase subunit CcmL,Biogenesis of c-type cytochromes,locus|B878_08145,
,NA,NA,NA,gi|444241041,fruR,ko:K03435,"Fructose repressor FruR, LacI family",- none -,locus|B878_07155,
,NA,NA,NA,gi|444241094,pomA,ko:K02556,Flagellar motor rotation protein MotA,Flagellar motility;
Flagellum,locus|B878_06778,
,NA,NA,NA,gi|444241323,ompU,ko:K08720,Outer membrane protein OmpU,- none -,locus|B878_05949,
,NA,NA,NA,gi|444241462,NA,NA,Phage replication protein,- none -,locus|B878_05212,
,NA,NA,NA,gi|444241611,hutW,ko:K21936,"Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake",- none -,locus|B878_04491,
,NA,NA,NA,gi|444241642,wza,ko:K01991,Polysaccharide export lipoprotein Wza,Capsular Polysaccharides Biosynthesis and Assembly,locus|B878_03756,
,NA,NA,NA,gi|444241792,mltA,ko:K08304,Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-),At5g37530 (CsdL protein family);
Murein Hydrolases,locus|B878_03636,
,NA,NA,NA,gi|444241873,NA,NA,"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_03201,
,NA,NA,NA,gi|444241899,tatB,ko:K03117,Twin-arginine translocation protein TatB,Twin-arginine translocation system,locus|B878_02486,
,NA,NA,NA,gi|444242407,ybiT,NA,ABC transporter ATP-binding protein uup,- none -,locus|B878_00635,
,NA,NA,NA,gi|444237528,csrA,ko:K03563,Carbon storage regulator,Carbon Starvation,locus|B878_24373,
,NA,NA,NA,gi|444237601,NA,NA,GCN5-related N-acetyltransferase,- none -,locus|B878_24106,
,NA,NA,NA,gi|444238300,NA,NA,Putative two-domain glycosyltransferase,LOS core oligosaccharide biosynthesis,locus|B878_20830,
,NA,NA,NA,gi|444238386,yrbA,NA,Acid stress protein IbaG,Broadly distributed proteins not in subsystems,locus|B878_20355,
,NA,NA,NA,gi|444238391,mlaF,ko:K02065,Phospholipid ABC transporter ATP-binding protein MlaF,Lipopolysaccharide assembly,locus|B878_20380,
,NA,NA,NA,gi|444238547,NA,NA,FIG01199902: hypothetical protein,- none -,locus|B878_19595,
,NA,NA,NA,gi|444238715,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238936,NA,ko:K09749,"Predicted polymerase, ortholog to Borrelia burgdorferi BB0267",- none -,locus|B878_17791,
,NA,NA,NA,gi|444238961,NA,NA,Response regulator,- none -,locus|B878_17666,
,NA,NA,NA,gi|444239020,NA,ko:K20919,Transcriptional regulator VpsR,Vibrio Polysaccharide (VPS) Biosynthesis,locus|B878_17209,
,NA,NA,NA,gi|444239232,NA,ko:K09891,FIG01200173: hypothetical protein,- none -,locus|B878_16265,
,NA,NA,NA,gi|444239290,recN,ko:K03631,DNA repair protein RecN,"DNA-replication;
DNA repair, bacterial",locus|B878_16000,
,NA,NA,NA,gi|444239317,NA,NA,Nucleoside-diphosphate-sugar epimerase,- none -,locus|B878_15830,
,NA,NA,NA,gi|444239330,ppaC,ko:K15986,Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1),Phosphate metabolism,locus|B878_15895,
,NA,NA,NA,gi|444239410,NA,"ko:K08884,ko:K12132",Serine/threonine protein kinase,- none -,locus|B878_15305,
,NA,NA,NA,gi|444239524,NA,ko:K02112,ATP synthase beta chain (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_14720,
,NA,NA,NA,gi|444239543,NA,NA,FIG01201749: hypothetical protein,- none -,locus|B878_14815,
,NA,NA,NA,gi|444239595,VPA0789,NA,FIG01199890: hypothetical protein,- none -,locus|B878_14410,
,NA,NA,NA,gi|444239708,NA,NA,type 1 fimbriae major subunit FimA,Type 1 pili (mannose-sensitive fimbriae),locus|B878_13795,
,NA,NA,NA,gi|444239868,NA,NA,Short chain dehydrogenase,- none -,locus|B878_12945,
,NA,NA,NA,gi|444239877,msrB,ko:K07305,Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12),Peptide methionine sulfoxide reductase,locus|B878_12990,
,NA,NA,NA,gi|444239913,NA,ko:K03310,Sodium/alanine symporter,- none -,locus|B878_12760,
,NA,NA,NA,gi|444240714,NA,NA,Histone acetyltransferase HPA2 and related acetyltransferases,- none -,locus|B878_08565,
,NA,NA,NA,gi|444240854,flhF,ko:K02404,Flagellar biosynthesis protein FlhF,Flagellar motility;
Flagellum,locus|B878_08055,
,NA,NA,NA,gi|444240940,NA,NA,hypothetical protein,- none -,locus|B878_07875,
,NA,NA,NA,gi|444241138,ubiF,ko:K03184,"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)",CBSS-87626.3.peg.3639;
Ubiquinone Biosynthesis;
Ubiquinone biosynthesis -- gjo,locus|B878_06998,
,NA,NA,NA,gi|444241264,trpE,ko:K01657,"Anthranilate synthase, aminase component (EC 4.1.3.27)",Tryptophan synthesis,locus|B878_06313,
,NA,NA,NA,gi|444241564,NA,ko:K09900,FIG01202327: hypothetical protein,- none -,locus|B878_04246,
,NA,NA,NA,gi|444241879,pspB,ko:K03970,Phage shock protein B,Phage shock protein (psp) operon,locus|B878_03231,
,NA,NA,NA,gi|444241924,yiiD,NA,Uncharacterized GNAT family acetyltransferase YiiD,- none -,locus|B878_02611,
,NA,NA,NA,gi|444242082,mtnN,ko:K01243,5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9),Methionine Biosynthesis;
Methionine Degradation;
Polyamine Metabolism,locus|B878_01549,
,NA,NA,NA,gi|444242299,NA,NA,hypothetical protein,- none -,locus|B878_00085,
,NA,NA,NA,gi|444242415,fdhA,ko:K00123,"Formate dehydrogenase-O, major subunit (EC 1.17.1.9)",Formate hydrogenase,locus|B878_00675,
,NA,NA,NA,gi|444237927,uvrD,ko:K03657,ATP-dependent DNA helicase UvrD/PcrA,"DNA repair, bacterial UvrD and related helicases",locus|B878_22652,
,NA,NA,NA,gi|444238153,NA,ko:K03316,"Na+/H+ antiporter, putative",- none -,locus|B878_21563,
,NA,NA,NA,gi|444238263,ftsX,ko:K09811,"Cell-division-associated, ABC-transporter-like signaling protein FtsX",Bacterial Cell Division,locus|B878_20970,
,NA,NA,NA,gi|444238546,NA,NA,hypothetical protein,- none -,locus|B878_19590,
,NA,NA,NA,gi|444238690,NA,NA,FIG01200466: hypothetical protein,- none -,locus|B878_18990,
,NA,NA,NA,gi|444238739,NA,NA,FIG01199987: hypothetical protein,- none -,locus|B878_18735,
,NA,NA,NA,gi|444238815,NA,NA,cell surface protein,- none -,locus|B878_18203,
,NA,NA,NA,gi|444239390,sohB,ko:K04774,Possible protease sohB (EC 3.4.21.-),- none -,locus|B878_15525,
,NA,NA,NA,gi|444239475,NA,ko:K04784,iron aquisition yersiniabactin synthesis enzyme (Irp2),- none -,locus|B878_15050,
,NA,NA,NA,gi|444240140,NA,NA,FIG01203701: hypothetical protein,- none -,locus|B878_11533,
,NA,NA,NA,gi|444240178,NA,ko:K09125,Putative preQ0 transporter,- none -,locus|B878_11733,
,NA,NA,NA,gi|444240316,tusC,ko:K07236,tRNA 5-methylaminomethyl-2-thiouridine synthase TusC,- none -,locus|B878_11021,
,NA,NA,NA,gi|444240409,NA,NA,FIG01203472: hypothetical protein,- none -,locus|B878_10557,
,NA,NA,NA,gi|444240503,ydiA,ko:K09773,FIG137360: hypothetical protein,- none -,locus|B878_10037,
,NA,NA,NA,gi|444240865,ccmA,ko:K02193,"ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA",Biogenesis of c-type cytochromes,locus|B878_08110,
,NA,NA,NA,gi|444240873,ccmI,NA,Cytochrome c heme lyase subunit CcmH,Biogenesis of c-type cytochromes;
Copper homeostasis,locus|B878_08150,
,NA,NA,NA,gi|444240972,dcuA,ko:K07791,Anaerobic C4-dicarboxylate transporter DcuA,- none -,locus|B878_07445,
,NA,NA,NA,gi|444241091,dxs,ko:K01662,1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7),Isoprenoid Biosynthesis;
Nonmevalonate Branch of Isoprenoid Biosynthesis;
Pyridoxin (Vitamin B6) Biosynthesis;
Thiamin biosynthesis,locus|B878_06763,
,NA,NA,NA,gi|444241406,ompU,ko:K08720,NA,NA,NA,
,NA,NA,NA,gi|444241469,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444241476,tdh,ko:K00060,L-threonine 3-dehydrogenase (EC 1.1.1.103),Glycine Biosynthesis;
Threonine degradation,locus|B878_05282,
,NA,NA,NA,gi|444241863,NA,ko:K12266,Anaerobic nitric oxide reductase transcription regulator NorR,- none -,locus|B878_03141,
,NA,NA,NA,gi|444241877,NA,NA,Probable Co/Zn/Cd efflux system membrane fusion protein,Cobalt-zinc-cadmium resistance,locus|B878_03221,
,NA,NA,NA,gi|444242288,NA,ko:K06956,"L-cystine uptake protein TcyP, sodium:anion symporter family",L-Cystine Uptake and Metabolism,locus|B878_00030,
,NA,NA,NA,gi|444237846,yejL,ko:K09904,UPF0352 protein YejL,- none -,locus|B878_23011,
,NA,NA,NA,gi|444237916,gloA,ko:K01759,Lactoylglutathione lyase (EC 4.4.1.5),Glutathione: Non-redox reactions;
Methylglyoxal Metabolism,locus|B878_22697,
,NA,NA,NA,gi|444238150,NA,ko:K00830,Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44),Pyruvate Alanine Serine Interconversions;
Serine-glyoxylate cycle,locus|B878_21548,
,NA,NA,NA,gi|444238178,thiG,ko:K03149,Thiazole synthase (EC 2.8.1.10),Thiamin biosynthesis,locus|B878_21419,
,NA,NA,NA,gi|444238253,NA,NA,Trimethylamine-N-oxide reductase (EC 1.6.6.9),- none -,locus|B878_21065,
,NA,NA,NA,gi|444238396,lptB,ko:K06861,"Lipopolysaccharide ABC transporter, ATP-binding protein LptB",Lipopolysaccharide assembly,locus|B878_20405,
,NA,NA,NA,gi|444238451,NA,NA,putative ATP-dependent exoDNAse (exonuclease V) alpha subunit,- none -,locus|B878_20095,
,NA,NA,NA,gi|444238654,NA,NA,"Putative cytochrome c oxidase, subunit I",- none -,locus|B878_19055,
,NA,NA,NA,gi|444238709,thiM,ko:K00878,Hydroxyethylthiazole kinase (EC 2.7.1.50),Thiamin biosynthesis,locus|B878_18825,
,NA,NA,NA,gi|444238861,NA,NA,FIG01201798: hypothetical protein,- none -,locus|B878_18168,
,NA,NA,NA,gi|444239191,NA,ko:K20959,GGDEF family protein,- none -,locus|B878_16330,
,NA,NA,NA,gi|444239195,NA,NA,FIG01201814: hypothetical protein,- none -,locus|B878_16350,
,NA,NA,NA,gi|444239437,NA,NA,FIG010427: hypothetical protein,- none -,locus|B878_15130,
,NA,NA,NA,gi|444239440,NA,ko:K14445,Di-and tricarboxylate transporter,- none -,locus|B878_15145,
,NA,NA,NA,gi|444239731,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239750,rsmG,ko:K03501,rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB,- none -,locus|B878_13595,
,NA,NA,NA,gi|444239976,NA,NA,FIG01199864: hypothetical protein,- none -,locus|B878_12640,
,NA,NA,NA,gi|444240113,pepN,ko:K01256,Membrane alanine aminopeptidase N (EC 3.4.11.2),EC 3.4.11.- Aminopeptidases,locus|B878_11788,
,NA,NA,NA,gi|444240193,cyoA,ko:K02297,Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-),Terminal cytochrome O ubiquinol oxidase;
Terminal cytochrome oxidases,locus|B878_11383,
,NA,NA,NA,gi|444240272,NA,NA,FIG01057823: hypothetical protein,- none -,locus|B878_11313,
,NA,NA,NA,gi|444240305,yheS,ko:K06158,Glutathione-regulated potassium-efflux system ATP-binding protein,Glutathione-regulated potassium-efflux system and associated functions;
Potassium homeostasis,locus|B878_10966,
,NA,NA,NA,gi|444240394,NA,ko:K03406,Methyl-accepting chemotaxis protein I (serine chemoreceptor protein),Bacterial Chemotaxis,locus|B878_10482,
,NA,NA,NA,gi|444240407,NA,NA,FIG01201986: hypothetical protein,- none -,locus|B878_10547,
,NA,NA,NA,gi|444240519,yadG,ko:K01990,"ABC-type multidrug transport system, ATPase component",- none -,locus|B878_09682,
,NA,NA,NA,gi|444240600,mutS,ko:K03555,DNA mismatch repair protein MutS,"DNA repair, bacterial MutL-MutS system",locus|B878_09622,
,NA,NA,NA,gi|444240651,NA,NA,Glutathione S-transferase (EC 2.5.1.18),Glutathione: Non-redox reactions,locus|B878_09357,
,NA,NA,NA,gi|444240852,flhB,ko:K02401,Flagellar biosynthesis protein FlhB,Flagellar motility;
Flagellum,locus|B878_08045,
,NA,NA,NA,gi|444240880,fadJ,ko:K01782,Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3),Acetyl-CoA fermentation to Butyrate;
Acetyl-CoA fermentation to Butyrate;
Acetyl-CoA fermentation to Butyrate;
Butanol Biosynthesis;
Butyrate metabolism cluster;
Butyrate metabolism cluster;
Isoleucine degradation;
Isoleucine degradation;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Polyhydroxybutyrate metabolism;
Valine degradation;
Valine degradation,locus|B878_08185,
,NA,NA,NA,gi|444241120,lipA,ko:K03644,Lipoate synthase,Lipoic acid metabolism,locus|B878_06908,
,NA,NA,NA,gi|444241126,mrdA,ko:K05515,Penicillin-binding protein 2 (PBP-2),Peptidoglycan Biosynthesis,locus|B878_06938,
,NA,NA,NA,gi|444241135,ybeY,ko:K07042,"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly",CBSS-56780.10.peg.1536;
Phosphate metabolism,locus|B878_06983,
,NA,NA,NA,gi|444241160,choX,ko:K02002,L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1),Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_06471,
,NA,NA,NA,gi|444241246,yfaY,NA,"Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type E",- none -,locus|B878_06223,
,NA,NA,NA,gi|444241250,NA,ko:K13746,putative carboxynorspermidine dehydrogenase,- none -,locus|B878_06243,
,NA,NA,NA,gi|444241311,truB,ko:K03177,tRNA pseudouridine synthase B (EC 4.2.1.70),"CBSS-138119.3.peg.2719;
Riboflavin, FMN and FAD metabolism Extended;
tRNA processing",locus|B878_05889,
,NA,NA,NA,gi|444241372,NA,ko:K19736,"Transcriptional regulator, TetR family",- none -,locus|B878_05502,
,NA,NA,NA,gi|444241494,NA,NA,Membrane fusion protein of RND family multidrug efflux pump,Multidrug Resistance Efflux Pumps,locus|B878_04651,
,NA,NA,NA,gi|444241680,NA,NA,Phenazine biosynthesis protein PhzF like,- none -,locus|B878_03966,
,NA,NA,NA,gi|444241688,NA,NA,"Glutathione S-transferase, omega (EC 2.5.1.18)",CBSS-89187.3.peg.2957;
Glutathione: Non-redox reactions,locus|B878_04006,
,NA,NA,NA,gi|444241770,apbE,ko:K03734,Thiamin biosynthesis lipoprotein ApbE,- none -,locus|B878_03526,
,NA,NA,NA,gi|444241964,NA,NA,TonB system biopolymer transport component; Chromosome segregation ATPase,Ton and Tol transport systems,locus|B878_02811,
,NA,NA,NA,gi|444242205,secY,ko:K03076,Preprotein translocase secY subunit (TC 3.A.5.1.1),- none -,locus|B878_01079,
,NA,NA,NA,gi|444242420,cobB,ko:K12410,NAD-dependent protein deacetylase of SIR2 family,"Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate;
Redox-dependent regulation of nucleus processes",locus|B878_00700,
,NA,NA,NA,gi|444237560,NA,NA,hypothetical protein,- none -,locus|B878_24263,
,NA,NA,NA,gi|444237969,NA,NA,"Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)","Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis",locus|B878_22467,
,NA,NA,NA,gi|444238067,glpT,ko:K02445,Glycerol-3-phosphate transporter,Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_21972,
,NA,NA,NA,gi|444238075,NA,NA,"Transcriptional regulator, AraC family",- none -,locus|B878_21872,
,NA,NA,NA,gi|444238203,NA,NA,"Type III secretion injected virulence protein (EC 3.4.22.-,YopT,cysteine protease,depolymerizes actin filaments of cytoskeleton,causes cytotoxicity)",- none -,locus|B878_21294,
,NA,NA,NA,gi|444238208,VVA1500,ko:K02005,Membrane-fusion protein,- none -,locus|B878_21319,
,NA,NA,NA,gi|444238282,NA,NA,FIG131328: Predicted ATP-dependent endonuclease of the OLD family,- none -,locus|B878_20915,
,NA,NA,NA,gi|444238425,NA,NA,FIG01199666: hypothetical protein,- none -,locus|B878_20340,
,NA,NA,NA,gi|444238691,clcA,ko:K03281,H(+)/Cl(-) exchange transporter ClcA,- none -,locus|B878_18995,
,NA,NA,NA,gi|444238854,NA,ko:K01802,FKBP-type peptidyl-prolyl cis-trans isomerase / Macrophage infectivity potentiator,- none -,locus|B878_18133,
,NA,NA,NA,gi|444239053,pstA,ko:K02038,Phosphate transport system permease protein PstA (TC 3.A.1.7.1),High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_17115,
,NA,NA,NA,gi|444239101,NA,NA,FIG01200071: hypothetical protein,- none -,locus|B878_16800,
,NA,NA,NA,gi|444239138,NA,NA,FIG01201104: hypothetical protein,- none -,locus|B878_16675,
,NA,NA,NA,gi|444239416,rlmJ,ko:K07115,Protein involved in catabolism of external DNA,DNA processing cluster,locus|B878_15335,
,NA,NA,NA,gi|444239535,NA,NA,Fatty acid cis/trans isomerase,- none -,locus|B878_14775,
,NA,NA,NA,gi|444239562,yehU,ko:K02478,Autolysin sensor kinase (EC 2.7.3.-),- none -,locus|B878_14620,
,NA,NA,NA,gi|444239890,NA,ko:K03442,Small-conductance mechanosensitive channel,- none -,locus|B878_13055,
,NA,NA,NA,gi|444240212,NA,NA,Cytochrome c oxidase subunit CcoO (EC 1.9.3.1),Terminal cytochrome C oxidases,locus|B878_11488,
,NA,NA,NA,gi|444240232,NA,NA,Secreted trypsin-like serine protease,- none -,locus|B878_11113,
,NA,NA,NA,gi|444240293,NA,NA,FIG01200941: hypothetical protein,- none -,locus|B878_10906,
,NA,NA,NA,gi|444240623,etfD,ko:K00311,Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1),Acetyl-CoA fermentation to Butyrate;
Anaerobic respiratory reductases,locus|B878_09217,
,NA,NA,NA,gi|444240649,NA,ko:K06934,Predicted DNA-binding protein,- none -,locus|B878_09347,
,NA,NA,NA,gi|444240766,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240900,NA,NA,GGDEF family protein,- none -,locus|B878_07675,
,NA,NA,NA,gi|444241054,fhs,ko:K01938,Formate--tetrahydrofolate ligase (EC 6.3.4.3),EC 6.3.4.- Ligases that form carbon-nitrogen bonds;
Folate Biosynthesis;
One-carbon metabolism by tetrahydropterines;
Serine-glyoxylate cycle,locus|B878_07220,
,NA,NA,NA,gi|444241489,ybaO,ko:K05800,Putative HTH-type transcriptional regulator ybaO,- none -,locus|B878_04626,
,NA,NA,NA,gi|444241575,NA,ko:K13244,hypothetical protein,- none -,locus|B878_04311,
,NA,NA,NA,gi|444241759,NA,NA,FIG01199549: hypothetical protein,- none -,locus|B878_03471,
,NA,NA,NA,gi|444241762,NA,ko:K03308,Sodium-dependent transporter,- none -,locus|B878_03486,
,NA,NA,NA,gi|444237547,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237710,yihD,ko:K09896,Protein yihD,- none -,locus|B878_23653,
,NA,NA,NA,gi|444237718,rssB,NA,Response regulator,- none -,locus|B878_23633,
,NA,NA,NA,gi|444237808,murB,ko:K00075,UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158),Peptidoglycan Biosynthesis;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_23208,
,NA,NA,NA,gi|444237813,NA,NA,FIG01199659: hypothetical protein,- none -,locus|B878_23163,
,NA,NA,NA,gi|444237848,NA,NA,FIG01199752: hypothetical protein,- none -,locus|B878_23021,
,NA,NA,NA,gi|444237875,queF,ko:K06879,NA,NA,NA,
,NA,NA,NA,gi|444237917,nth,ko:K10773,Endonuclease III (EC 4.2.99.18),DNA Repair Base Excision,locus|B878_22702,
,NA,NA,NA,gi|444238056,ycgL,ko:K09902,Protein YcgL,CBSS-243277.1.peg.4359,locus|B878_22047,
,NA,NA,NA,gi|444238206,VP1997,ko:K02004,"ABC-type antimicrobial peptide transport system, permease component",- none -,locus|B878_21309,
,NA,NA,NA,gi|444238238,sirB,NA,FIG002082: Protein SirB2,- none -,locus|B878_21140,
,NA,NA,NA,gi|444238393,kdsD,ko:K06041,Arabinose 5-phosphate isomerase (EC 5.3.1.13),- none -,locus|B878_20390,
,NA,NA,NA,gi|444238431,NA,NA,FIG01200538: hypothetical protein,- none -,locus|B878_20185,
,NA,NA,NA,gi|444238463,coaBC,ko:K13038,Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5),Coenzyme A Biosynthesis;
Coenzyme A Biosynthesis,locus|B878_20155,
,NA,NA,NA,gi|444238496,ptrB,ko:K01354,Protease II (EC 3.4.21.83),- none -,locus|B878_19895,
,NA,NA,NA,gi|444238616,metAS,ko:K00651,Homoserine O-succinyltransferase (EC 2.3.1.46),Methionine Biosynthesis,locus|B878_19370,
,NA,NA,NA,gi|444238722,NA,ko:K06075,"Transcriptional regulator, MarR family",- none -,locus|B878_18910,
,NA,NA,NA,gi|444238805,NA,NA,FIG01200472: hypothetical protein,- none -,locus|B878_18398,
,NA,NA,NA,gi|444238851,NA,NA,Glutaredoxin,Glutaredoxins;
Glutathione: Redox cycle,locus|B878_18118,
,NA,NA,NA,gi|444238879,NA,ko:K03286,Outer membrane protein A precursor,Osmoregulation,locus|B878_17976,
,NA,NA,NA,gi|444238974,NA,NA,putative short-chain dehydrogenase,- none -,locus|B878_17489,
,NA,NA,NA,gi|444239051,ppk,ko:K00937,Polyphosphate kinase (EC 2.7.4.1),High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_17105,
,NA,NA,NA,gi|444239055,phoU,ko:K02039,Phosphate transport system regulatory protein PhoU,High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism,locus|B878_17125,
,NA,NA,NA,gi|444239056,NA,ko:K22468,Polyphosphate kinase 2 (EC 2.7.4.1),- none -,locus|B878_17130,
,NA,NA,NA,gi|444239080,yfjD,NA,Hemolysins and related proteins containing CBS domains,- none -,locus|B878_16970,
,NA,NA,NA,gi|444239090,NA,ko:K20918,DNA-binding HTH domain-containing protein,- none -,locus|B878_17020,
,NA,NA,NA,gi|444239187,NA,NA,Glyoxalase family protein,- none -,locus|B878_16595,
,NA,NA,NA,gi|444239189,NA,NA,FIG01200668: hypothetical protein,- none -,locus|B878_16320,
,NA,NA,NA,gi|444239279,abgT,NA,Aminobenzoyl-glutamate transport protein,- none -,locus|B878_15945,
,NA,NA,NA,gi|444239342,dapF,ko:K01778,Diaminopimelate epimerase (EC 5.1.1.7),CBSS-323850.3.peg.3269;
CBSS-84588.1.peg.1247;
Lysine Biosynthesis DAP Pathway,locus|B878_15615,
,NA,NA,NA,gi|444239403,dppC,ko:K02034,Dipeptide transport system permease protein DppC (TC 3.A.1.5.2),ABC transporter dipeptide (TC 3.A.1.5.2),locus|B878_15270,
,NA,NA,NA,gi|444239439,NA,NA,GGDEF family protein,- none -,locus|B878_15140,
,NA,NA,NA,gi|444239489,fhuC,ko:K02013,"Ferric aerobactin ABC transporter, ATPase component",Siderophore Aerobactin,locus|B878_14830,
,NA,NA,NA,gi|444239632,NA,NA,Lactoylglutathione lyase,- none -,locus|B878_14175,
,NA,NA,NA,gi|444239635,NA,NA,hypothetical protein,- none -,locus|B878_14190,
,NA,NA,NA,gi|444239739,glmU,ko:K04042,NA,NA,NA,
,NA,NA,NA,gi|444239889,NA,NA,FIG01199877: hypothetical protein,- none -,locus|B878_13050,
,NA,NA,NA,gi|444240117,yebR,ko:K08968,L-methionine (R)-S-oxide reductase (EC 1.8.4.14),- none -,locus|B878_11808,
,NA,NA,NA,gi|444240375,NA,ko:K09791,FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster,- none -,locus|B878_10387,
,NA,NA,NA,gi|444240384,mfd,ko:K03723,Transcription-repair coupling factor,Cell division-ribosomal stress proteins cluster;
DNA-replication;
Transcription factors bacterial,locus|B878_10432,
,NA,NA,NA,gi|444240458,NA,"ko:K17836,ko:K19217",Beta-lactamase (EC 3.5.2.6),Beta-lactamase,locus|B878_10312,
,NA,NA,NA,gi|444240530,mrcB,ko:K05365,Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-),Peptidoglycan Biosynthesis;
Type IV pilus,locus|B878_09737,
,NA,NA,NA,gi|444240531,VP2496,ko:K07001,FIG01045360: hypothetical protein,- none -,locus|B878_09742,
,NA,NA,NA,gi|444240615,NA,ko:K00449,"Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3)",- none -,locus|B878_09177,
,NA,NA,NA,gi|444240617,NA,ko:K00799,Glutathione S-transferase (EC 2.5.1.18),Glutathione: Non-redox reactions,locus|B878_09187,
,NA,NA,NA,gi|444240667,moaC,ko:K03637,Molybdenum cofactor biosynthesis protein MoaC,Molybdenum cofactor biosynthesis,locus|B878_08915,
,NA,NA,NA,gi|444240699,rluC,ko:K06179,Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70),Ribosome biogenesis bacterial,locus|B878_09075,
,NA,NA,NA,gi|444240761,NA,NA,hypothetical protein,- none -,locus|B878_08830,
,NA,NA,NA,gi|444240790,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240803,sgbU,ko:K03079,L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-),L-ascorbate utilization (and related gene clusters),locus|B878_08410,
,NA,NA,NA,gi|444240855,flhG,ko:K04562,Flagellar synthesis regulator FleN,Flagellar motility;
Flagellum,locus|B878_08060,
,NA,NA,NA,gi|444240858,cheZ,ko:K03414,Chemotaxis response - phosphatase CheZ,Bacterial Chemotaxis,locus|B878_08075,
,NA,NA,NA,gi|444240883,sixA,ko:K08296,Phosphohistidine phosphatase SixA,- none -,locus|B878_08200,
,NA,NA,NA,gi|444240889,NA,NA,Uncharacterized protein YfcL,- none -,locus|B878_08240,
,NA,NA,NA,gi|444240961,NA,ko:K07182,Predicted signal-transduction protein containing cAMP-binding and CBS domains,CBSS-342610.3.peg.1536;
cAMP signaling in bacteria,locus|B878_07390,
,NA,NA,NA,gi|444241043,NA,ko:K14761,FIG002958: hypothetical protein,Hypothetical Coupled to RecF,locus|B878_07165,
,NA,NA,NA,gi|444241092,ispA,ko:K00795,Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29),Isoprenoid Biosynthesis;
Isoprenoinds for Quinones;
Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis,locus|B878_06768,
,NA,NA,NA,gi|444241107,syd,ko:K15723,Syd protein,- none -,locus|B878_06843,
,NA,NA,NA,gi|444241288,NA,NA,FIG01200899: hypothetical protein,- none -,locus|B878_05764,
,NA,NA,NA,gi|444241330,NA,ko:K18990,Membrane-fusion protein,- none -,locus|B878_05984,
,NA,NA,NA,gi|444241336,yhfA,ko:K07397,OsmC/Ohr family protein,- none -,locus|B878_05317,
,NA,NA,NA,gi|444241392,NA,NA,"TPR domain protein, putative component of TonB system",Ton and Tol transport systems,locus|B878_05602,
,NA,NA,NA,gi|444241433,NA,NA,FIG01203071: hypothetical protein,- none -,locus|B878_05057,
,NA,NA,NA,gi|444241553,NA,"ko:K02768,ko:K02769,ko:K02770","PTS system, fructose-specific IIA component (EC 2.7.1.69) / PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)",- none -,locus|B878_04191,
,NA,NA,NA,gi|444241595,VVA0408,ko:K07140,Flavodoxin reductases (ferredoxin-NADPH reductases) family 1,Anaerobic respiratory reductases,locus|B878_04411,
,NA,NA,NA,gi|444241603,VPA0419,NA,FIG01200492: hypothetical protein,- none -,locus|B878_04451,
,NA,NA,NA,gi|444241624,NA,NA,Transcriptional regulator,- none -,locus|B878_04556,
,NA,NA,NA,gi|444241643,nfsA,"ko:K10678,ko:K19285",NADPH-flavin oxidoreductase,- none -,locus|B878_03761,
,NA,NA,NA,gi|444241660,NA,ko:K07107,Predicted thioesterase,- none -,locus|B878_03856,
,NA,NA,NA,gi|444241745,glnD,ko:K00990,[Protein-PII] uridylyltransferase (EC 2.7.7.59),Ammonia assimilation;
CBSS-312309.3.peg.1965,locus|B878_03401,
,NA,NA,NA,gi|444241764,VP2339,NA,Methyl-accepting chemotaxis protein,- none -,locus|B878_03496,
,NA,NA,NA,gi|444241807,cydC,ko:K16012,Transport ATP-binding protein CydC,Terminal cytochrome d ubiquinol oxidases;
Terminal cytochrome oxidases,locus|B878_02861,
,NA,NA,NA,gi|444241811,NA,NA,FIG01203577: hypothetical protein,- none -,locus|B878_02881,
,NA,NA,NA,gi|444241897,ubiB,ko:K03688,Ubiquinone biosynthesis monooxygenase UbiB,Ubiquinone Biosynthesis;
Ubiquinone biosynthesis -- gjo,locus|B878_02476,
,NA,NA,NA,gi|444241959,NA,NA,"TPR domain protein, putative component of TonB system",Ton and Tol transport systems,locus|B878_02786,
,NA,NA,NA,gi|444241969,dppD,ko:K02031,"ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_02836,
,NA,NA,NA,gi|444241994,bioB,ko:K01012,Biotin synthase (EC 2.8.1.6),Biotin biosynthesis,locus|B878_02061,
,NA,NA,NA,gi|444242009,guaD,ko:K01487,Guanine deaminase (EC 3.5.4.3),Purine Utilization,locus|B878_02136,
,NA,NA,NA,gi|444242030,NA,NA,Type III secretion host injection protein (YopB),- none -,locus|B878_02241,
,NA,NA,NA,gi|444242035,NA,ko:K03230,"Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)",- none -,locus|B878_02266,
,NA,NA,NA,gi|444242041,NA,ko:K03224,Flagellum-specific ATP synthase FliI,Flagellar motility;
Flagellum,locus|B878_02296,
,NA,NA,NA,gi|444242043,NA,ko:K04057,Type III secretion protein (YscP),- none -,locus|B878_02306,
,NA,NA,NA,gi|444242380,ribE,ko:K00793,"Lumazine protein, riboflavin synthase homolog",- none -,locus|B878_00490,
,NA,NA,NA,gi|444242382,NA,NA,Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation,- none -,locus|B878_00500,
,NA,NA,NA,gi|444242434,ccoI,ko:K01533,FUPA27 P-type ATPase,- none -,locus|B878_00770,
,NA,NA,NA,gi|444242446,matP,ko:K09911,Macrodomain Ter protein YcbG,- none -,locus|B878_00845,
,NA,NA,NA,gi|444237709,fixG,NA,"Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation",Biogenesis of cbb3-type cytochrome c oxidases;
Terminal cytochrome C oxidases,locus|B878_23648,
,NA,NA,NA,gi|444237782,aceF,ko:K00627,NA,NA,NA,
,NA,NA,NA,gi|444237792,rpmI,ko:K02916,LSU ribosomal protein L35p,Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins);
Ribosome LSU bacterial,locus|B878_23283,
,NA,NA,NA,gi|444238133,NA,ko:K02393,Flagellar L-ring protein FlgH,Flagellar motility;
Flagellum,locus|B878_21592,
,NA,NA,NA,gi|444238190,NA,NA,Chitinase (EC 3.2.1.14),Chitin and N-acetylglucosamine utilization,locus|B878_21354,
,NA,NA,NA,gi|444238254,NA,NA,Cytochrome c-type protein TorY,- none -,locus|B878_21070,
,NA,NA,NA,gi|444238301,NA,ko:K12984,Lipopolysaccharide biosynthesis glycosyltransferase,Vibrio Core Oligosaccharide Biosynthesis,locus|B878_20835,
,NA,NA,NA,gi|444238485,eptA,ko:K03760,Predicted membrane-associated metal-dependent hydrolase,- none -,locus|B878_20045,
,NA,NA,NA,gi|444238706,NA,ko:K15599,"Hydroxymethylpyrimidine ABC transporter, transmembrane component",Thiamin biosynthesis,locus|B878_18810,
,NA,NA,NA,gi|444238778,NA,NA,"Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1",Glutathionylspermidine and Trypanothione,locus|B878_18503,
,NA,NA,NA,gi|444239380,NA,ko:K09857,probable lipoprotein protein YPO1422,- none -,locus|B878_15475,
,NA,NA,NA,gi|444239385,lapB,ko:K19804,"Heat shock (predicted periplasmic) protein YciM, precursor",- none -,locus|B878_15500,
,NA,NA,NA,gi|444239444,pldA,ko:K01058,Phospholipase A1 (EC 3.1.1.32) (EC 3.1.1.4); Outer membrane phospholipase A,Triacylglycerol metabolism,locus|B878_15165,
,NA,NA,NA,gi|444239549,lgt,ko:K13292,Prolipoprotein diacylglyceryl transferase,Lipoprotein Biosynthesis,locus|B878_14555,
,NA,NA,NA,gi|444239631,NA,ko:K08276,"Proteinase inhibitor I11, ecotin precursor",- none -,locus|B878_14170,
,NA,NA,NA,gi|444239748,atpI,ko:K02116,ATP synthase subunit I,- none -,locus|B878_13575,
,NA,NA,NA,gi|444239779,trkH,ko:K03498,Potassium uptake protein TrkH,Potassium homeostasis,locus|B878_13740,
,NA,NA,NA,gi|444239827,dnaB,ko:K02314,Replicative DNA helicase (DnaB) (EC 3.6.4.12),DNA-replication,locus|B878_13140,
,NA,NA,NA,gi|444240015,NA,ko:K08974,membrane protein,- none -,locus|B878_12455,
,NA,NA,NA,gi|444240076,NA,NA,Type III effector HopPmaJ,- none -,locus|B878_12003,
,NA,NA,NA,gi|444240188,NA,NA,putative NADH-dependent flavin oxidoreductase,- none -,locus|B878_11358,
,NA,NA,NA,gi|444240213,NA,NA,Putative diheme cytochrome c-553,Soluble cytochromes and functionally related electron carriers,locus|B878_11493,
,NA,NA,NA,gi|444240404,NA,NA,hypothetical protein,- none -,locus|B878_10532,
,NA,NA,NA,gi|444240440,ugpE,ko:K05815,"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)",Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_10222,
,NA,NA,NA,gi|444240654,NA,NA,conserved hypothetical protein,- none -,locus|B878_09372,
,NA,NA,NA,gi|444240657,NA,NA,"Cell wall endopeptidase, family M23/M37",- none -,locus|B878_09387,
,NA,NA,NA,gi|444240968,NA,NA,FIG152265: Sodium:solute symporter associated protein,- none -,locus|B878_07425,
,NA,NA,NA,gi|444241049,NA,NA,putative membrane protein,- none -,locus|B878_07195,
,NA,NA,NA,gi|444241105,NA,NA,FIG01199812: hypothetical protein,- none -,locus|B878_06833,
,NA,NA,NA,gi|444241110,NA,NA,FIG01204120: hypothetical protein,- none -,locus|B878_06858,
,NA,NA,NA,gi|444241350,NA,ko:K03317,Nucleoside permease NupC,Deoxyribose and Deoxynucleoside Catabolism;
Xanthine Metabolism in Bacteria,locus|B878_05387,
,NA,NA,NA,gi|444241422,NA,NA,hypothetical protein,- none -,locus|B878_05002,
,NA,NA,NA,gi|444241482,NA,ko:K07497,NA,NA,NA,
,NA,NA,NA,gi|444241508,alaA,ko:K14260,Aspartate aminotransferase (EC 2.6.1.1),"Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis;
Threonine and Homoserine Biosynthesis",locus|B878_04721,
,NA,NA,NA,gi|444241532,rhlE-1,NA,ATP-dependent RNA helicase VC1407,"ATP-dependent RNA helicases, bacterial",locus|B878_04841,
,NA,NA,NA,gi|444241711,NA,NA,D-serine dehydratase transcriptional activator,Glycine and Serine Utilization,locus|B878_04131,
,NA,NA,NA,gi|444241715,opuAB,ko:K02001,"Betaine/L-proline ABC transporter, permease protein ProW (TC 3.A.1.12.1)",Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_04151,
,NA,NA,NA,gi|444241910,HD1705,NA,Periplasmic/membrane protein associated with DUF414,- none -,locus|B878_02541,
,NA,NA,NA,gi|444241938,epsL,ko:K02461,General secretion pathway protein L,General Secretion Pathway,locus|B878_02681,
,NA,NA,NA,gi|444242125,parE,ko:K02622,Topoisomerase IV subunit B (EC 5.99.1.-),"CBSS-342610.3.peg.1794;
DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones",locus|B878_01774,
,NA,NA,NA,gi|444242127,yqiA,ko:K07000,"Putative esterase, FIGfam005057",CBSS-342610.3.peg.1794,locus|B878_01784,
,NA,NA,NA,gi|444242317,NA,NA,Lycopene beta cyclase (EC 1.14.-.-),Proteorhodopsin,locus|B878_00175,
,NA,NA,NA,gi|444242321,NA,NA,hypothetical protein,- none -,locus|B878_00195,
,NA,NA,NA,gi|444237597,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237636,NA,ko:K07114,NA,NA,NA,
,NA,NA,NA,gi|444237715,cvpA,ko:K03558,Bacteriocin production protein,Colicin V and Bacteriocin Production Cluster,locus|B878_23618,
,NA,NA,NA,gi|444237758,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237786,nadC,ko:K00767,Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19),Mycobacterium virulence operon possibly involved in quinolinate biosynthesis;
NAD and NADP cofactor biosynthesis global,locus|B878_23328,
,NA,NA,NA,gi|444237795,NA,NA,FIG01205881: hypothetical protein,- none -,locus|B878_23298,
,NA,NA,NA,gi|444237833,NA,NA,Haloacid dehalogenase-like hydrolase,- none -,locus|B878_23103,
,NA,NA,NA,gi|444237857,NA,NA,FIG01201055: hypothetical protein,- none -,locus|B878_22981,
,NA,NA,NA,gi|444237944,flgG,ko:K02392,Flagellar basal-body rod protein FlgG,Flagellum,locus|B878_22547,
,NA,NA,NA,gi|444237975,ahpF,ko:K03387,NADH oxidase (H2O2-forming) (EC 1.6.3.3),Thioredoxin-disulfide reductase,locus|B878_22362,
,NA,NA,NA,gi|444238187,NA,NA,FIG01201220: hypothetical protein,- none -,locus|B878_21339,
,NA,NA,NA,gi|444238288,NA,NA,Putative transcriptional regulator,- none -,locus|B878_20945,
,NA,NA,NA,gi|444238348,yrdA,NA,"carbonic anhydrase, family 3",- none -,locus|B878_20535,
,NA,NA,NA,gi|444238374,wzz,NA,Lipopolysaccharide biosynthesis,- none -,locus|B878_20490,
,NA,NA,NA,gi|444238422,modA,ko:K02020,"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)",Molybdenum cofactor biosynthesis,locus|B878_20325,
,NA,NA,NA,gi|444238460,pyrE,ko:K00762,Orotate phosphoribosyltransferase (EC 2.4.2.10),De Novo Pyrimidine Synthesis,locus|B878_20140,
,NA,NA,NA,gi|444238492,NA,"ko:K16291,ko:K19236",FIG01199739: hypothetical protein,- none -,locus|B878_19875,
,NA,NA,NA,gi|444238603,NA,NA,Putative threonine efflux protein,- none -,locus|B878_19305,
,NA,NA,NA,gi|444238662,pilT,ko:K02669,Twitching motility protein PilT,Heat shock dnaK gene cluster extended;
Type IV pilus,locus|B878_19095,
,NA,NA,NA,gi|444238663,yggS,ko:K06997,"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC",A Hypothetical Protein Related to Proline Metabolism;
CBSS-630.2.peg.3360,locus|B878_19100,
,NA,NA,NA,gi|444238665,yggT,ko:K02221,"COG0762, cell division protein YlmG/Ycf19 (putative), YggT family",CBSS-630.2.peg.3360;
Phosphate metabolism,locus|B878_19110,
,NA,NA,NA,gi|444238673,mutY,ko:K03575,A/G-specific adenine glycosylase (EC 3.2.2.-),"DNA repair, bacterial",locus|B878_19150,
,NA,NA,NA,gi|444238681,NA,NA,hypothetical protein,- none -,locus|B878_18945,
,NA,NA,NA,gi|444238708,NA,ko:K03707,Thiaminase II (EC 3.5.99.2) involved in salvage of thiamin pyrimidine moiety,Thiamin biosynthesis,locus|B878_18820,
,NA,NA,NA,gi|444238724,NA,NA,"GntR family transcriptional regulator VVA0237 @ Transcriptional regulator, GntR family domain",- none -,locus|B878_18920,
,NA,NA,NA,gi|444238799,yfcH,ko:K07071,Cell division inhibitor,Persister Cells,locus|B878_18368,
,NA,NA,NA,gi|444238891,flgB,ko:K02387,Flagellar basal-body rod protein FlgB,Flagellum;
Flagellum in Campylobacter,locus|B878_18036,
,NA,NA,NA,gi|444238905,NA,NA,FIG01203911: hypothetical protein,- none -,locus|B878_17861,
,NA,NA,NA,gi|444239003,znuA,ko:K09815,"Zinc ABC transporter, periplasmic-binding protein ZnuA",- none -,locus|B878_17384,
,NA,NA,NA,gi|444239071,coaE,ko:K00859,Dephospho-CoA kinase (EC 2.7.1.24),Coenzyme A Biosynthesis,locus|B878_16925,
,NA,NA,NA,gi|444239130,fadE,ko:K06445,Acyl-coenzyme A dehydrogenase FadE,Isoleucine degradation,locus|B878_16635,
,NA,NA,NA,gi|444239162,vcaM,ko:K18893,"ABC transporter, ATP-binding protein",- none -,locus|B878_16470,
,NA,NA,NA,gi|444239200,NA,NA,Fimbrial protein pilin,- none -,locus|B878_16375,
,NA,NA,NA,gi|444239331,VV1382,NA,FIG01200523: hypothetical protein,- none -,locus|B878_15900,
,NA,NA,NA,gi|444239346,NA,ko:K20964,Sensory box/GGDEF family protein,- none -,locus|B878_15635,
,NA,NA,NA,gi|444239611,NA,ko:K04518,Prephenate dehydratase (EC 4.2.1.51),Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate,locus|B878_14490,
,NA,NA,NA,gi|444239613,VVA0683,NA,FIG01200547: hypothetical protein,- none -,locus|B878_14500,
,NA,NA,NA,gi|444239640,NA,ko:K03543,Membrane fusion component of MSF-type tripartite multidrug efflux system,- none -,locus|B878_14215,
,NA,NA,NA,gi|444239663,NA,NA,Predicted hydrolase,- none -,locus|B878_14330,
,NA,NA,NA,gi|444239726,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239749,parA,ko:K03496,Chromosome (plasmid) partitioning protein ParA,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_13590,
,NA,NA,NA,gi|444239758,yecC,ko:K16963,"ABC-type polar amino acid transport system, ATPase component",- none -,locus|B878_13635,
,NA,NA,NA,gi|444239772,tusA,ko:K04085,tRNA 5-methylaminomethyl-2-thiouridine synthase TusA,- none -,locus|B878_13705,
,NA,NA,NA,gi|444239780,hemG,ko:K00230,"Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)",- none -,locus|B878_13745,
,NA,NA,NA,gi|444239812,glgA,ko:K00703,"Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)",Glycogen metabolism,locus|B878_13480,
,NA,NA,NA,gi|444239864,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240046,NA,ko:K11901,T6SS component TssB (ImpB/VipA),Type VI secretion systems;
USS-DB-7,locus|B878_12260,
,NA,NA,NA,gi|444240072,acs-2,ko:K01907,Acetoacetyl-CoA synthetase (EC 6.2.1.16),Polyhydroxybutyrate metabolism,locus|B878_11983,
,NA,NA,NA,gi|444240089,NA,NA,GCN5-related N-acetyltransferase,- none -,locus|B878_12068,
,NA,NA,NA,gi|444240098,NA,NA,MSHA biogenesis protein MshQ,Mannose-sensitive hemagglutinin type 4 pilus,locus|B878_12113,
,NA,NA,NA,gi|444240131,aapP,"ko:K02028,ko:K09972","ABC-type polar amino acid transport system, ATPase component",- none -,locus|B878_11878,
,NA,NA,NA,gi|444240182,NA,NA,FIG01203280: hypothetical protein,- none -,locus|B878_11328,
,NA,NA,NA,gi|444240194,NA,ko:K00059,3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100),Fatty Acid Biosynthesis FASII,locus|B878_11388,
,NA,NA,NA,gi|444240198,NA,NA,Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12),Isoleucine degradation;
Valine degradation,locus|B878_11408,
,NA,NA,NA,gi|444240203,liuC,ko:K13766,Methylglutaconyl-CoA hydratase (EC 4.2.1.18),- none -,locus|B878_11443,
,NA,NA,NA,gi|444240236,fliG,ko:K02410,Flagellar motor switch protein FliG,Bacterial Chemotaxis;
Flagellum,locus|B878_11133,
,NA,NA,NA,gi|444240240,NA,ko:K21218,putative sodium-type flagellar protein MotY precursor,- none -,locus|B878_11153,
,NA,NA,NA,gi|444240341,NA,ko:K06987,Predicted deacylase,- none -,locus|B878_10657,
,NA,NA,NA,gi|444240358,NA,NA,FIG01199933: hypothetical protein,- none -,locus|B878_10742,
,NA,NA,NA,gi|444240363,NA,NA,FIG01200898: hypothetical protein,- none -,locus|B878_10767,
,NA,NA,NA,gi|444240383,VV12079,NA,FIG01200287: hypothetical protein,- none -,locus|B878_10427,
,NA,NA,NA,gi|444240443,ugpQ,ko:K01126,Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46),Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_10237,
,NA,NA,NA,gi|444240457,NA,NA,Nudix hydrolase family protein PA3470,Nudix proteins (nucleoside triphosphate hydrolases),locus|B878_10307,
,NA,NA,NA,gi|444240488,NA,NA,Phosphoserine phosphatase (EC 3.1.3.3),Glycine and Serine Utilization;
Serine Biosynthesis,locus|B878_09952,
,NA,NA,NA,gi|444240549,chiS,ko:K19694,Chitin catabolic cascade sensor histidine kinase ChiS,(GlcNAc)2 Catabolic Operon,locus|B878_09832,
,NA,NA,NA,gi|444240565,zapA,ko:K09888,Z-ring-associated protein ZapA,Bacterial Cytoskeleton,locus|B878_09447,
,NA,NA,NA,gi|444240572,sdhE,ko:K09159,"Succinate dehydrogenase flavin-adding protein, antitoxin of CptAB toxin-antitoxin",- none -,locus|B878_09482,
,NA,NA,NA,gi|444240661,uvrB,ko:K03702,Excinuclease ABC subunit B,"DNA repair, UvrABC system",locus|B878_08885,
,NA,NA,NA,gi|444240669,moaE,ko:K03635,Molybdenum cofactor biosynthesis protein MoaE,Molybdenum cofactor biosynthesis,locus|B878_08925,
,NA,NA,NA,gi|444240725,VV20255,NA,Conserved protein containing a Zn-ribbon motif,- none -,locus|B878_08620,
,NA,NA,NA,gi|444240839,fliG,ko:K02410,Flagellar motor switch protein FliG,Bacterial Chemotaxis;
Flagellum,locus|B878_07980,
,NA,NA,NA,gi|444241001,cysE,ko:K00640,Serine acetyltransferase (EC 2.3.1.30),Cysteine Biosynthesis;
Methionine Biosynthesis;
Vibrio Polysaccharide (VPS) Biosynthesis,locus|B878_07590,
,NA,NA,NA,gi|444241031,NA,NA,"Transcriptional regulator, Xre family",- none -,locus|B878_07105,
,NA,NA,NA,gi|444241128,rsfS,ko:K09710,Ribosomal silencing factor RsfA,- none -,locus|B878_06948,
,NA,NA,NA,gi|444241158,betB,ko:K00130,Betaine aldehyde dehydrogenase (EC 1.2.1.8),Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_06461,
,NA,NA,NA,gi|444241162,choV,ko:K02000,L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1),Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_06481,
,NA,NA,NA,gi|444241165,NA,ko:K07403,Putative membrane-bound ClpP-class protease associated with aq_911,- none -,locus|B878_06496,
,NA,NA,NA,gi|444241214,NA,ko:K07182,Predicted signal-transduction protein containing cAMP-binding and CBS domains,CBSS-342610.3.peg.1536;
cAMP signaling in bacteria,locus|B878_06053,
,NA,NA,NA,gi|444241215,NA,ko:K02342,DNA polymerase III epsilon subunit (EC 2.7.7.7),CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
DNA-replication,locus|B878_06058,
,NA,NA,NA,gi|444241226,ycbL,NA,"Hypothetical metal-binding enzyme, YcbL homolog",- none -,locus|B878_06123,
,NA,NA,NA,gi|444241253,uvrC,ko:K03703,Excinuclease ABC subunit C,"DNA repair, UvrABC system",locus|B878_06258,
,NA,NA,NA,gi|444241285,NA,NA,FIG01201196: hypothetical protein,- none -,locus|B878_05749,
,NA,NA,NA,gi|444241320,ftsJ,ko:K02427,Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-),- none -,locus|B878_05934,
,NA,NA,NA,gi|444241329,NA,ko:K18989,RND multidrug efflux transporter; Acriflavin resistance protein,Multidrug Resistance Efflux Pumps,locus|B878_05979,
,NA,NA,NA,gi|444241408,NA,NA,ATP-dependent protease La (EC 3.4.21.53) Type II,"Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent",locus|B878_04932,
,NA,NA,NA,gi|444241436,NA,NA,hypothetical protein,- none -,locus|B878_05072,
,NA,NA,NA,gi|444241490,NA,ko:K01738,Cysteine synthase B (EC 2.5.1.47),Cysteine Biosynthesis,locus|B878_04631,
,NA,NA,NA,gi|444241507,menF,ko:K02552,Menaquinone-specific isochorismate synthase (EC 5.4.4.2),"Menaquinone and Phylloquinone Biosynthesis;
Menaquinone biosynthesis from chorismate via 1,4-dihydroxy-2-naphthoate",locus|B878_04716,
,NA,NA,NA,gi|444241527,NA,NA,Selenoprotein O and cysteine-containing homologs,Selenoprotein O,locus|B878_04816,
,NA,NA,NA,gi|444241563,NA,ko:K16137,"Transcriptional regulator, TetR family",- none -,locus|B878_04241,
,NA,NA,NA,gi|444241633,acrA,ko:K03585,"RND efflux system, membrane fusion protein CmeA",Multidrug Resistance Efflux Pumps,locus|B878_03711,
,NA,NA,NA,gi|444241702,NA,ko:K08281,Nicotinamidase (EC 3.5.1.19),NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes,locus|B878_04086,
,NA,NA,NA,gi|444241730,lpxB,ko:K00748,Lipid-A-disaccharide synthase (EC 2.4.1.182),- none -,locus|B878_03326,
,NA,NA,NA,gi|444241782,NA,ko:K07167,FIG111991: hypothetical protein,- none -,locus|B878_03586,
,NA,NA,NA,gi|444241824,NA,NA,Iron-containing alcohol dehydrogenase (EC 1.1.1.1),- none -,locus|B878_02946,
,NA,NA,NA,gi|444241888,NA,NA,hypothetical protein,- none -,locus|B878_02431,
,NA,NA,NA,gi|444241912,add,ko:K01488,Adenosine deaminase (EC 3.5.4.4),- none -,locus|B878_02551,
,NA,NA,NA,gi|444241913,NA,NA,diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s),Bacterial hemoglobins,locus|B878_02556,
,NA,NA,NA,gi|444241914,glnG,ko:K07712,Nitrogen regulation protein NtrC,- none -,locus|B878_02561,
,NA,NA,NA,gi|444242051,NA,NA,FIG01200002: hypothetical protein,- none -,locus|B878_02346,
,NA,NA,NA,gi|444242093,NA,NA,"Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives",- none -,locus|B878_01604,
,NA,NA,NA,gi|444242098,murC,ko:K01924,UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8),Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo;
cell division cluster containing FtsQ,locus|B878_01629,
,NA,NA,NA,gi|444242107,rsmH,ko:K03438,16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) ## RsmH,Bacterial Cell Division,locus|B878_01674,
,NA,NA,NA,gi|444242147,tsaD,ko:K01409,"TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA",Bacterial RNA-metabolizing Zn-dependent hydrolases;
Conserved gene cluster associated with Met-tRNA formyltransferase;
Macromolecular synthesis operon;
YgjD and YeaZ;
YrdC-YciO;
YrdC-YciO-Sua5 and associated protein families,locus|B878_01894,
,NA,NA,NA,gi|444242169,hpcD,ko:K01826,5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10),Aromatic amino acid degradation,locus|B878_00899,
,NA,NA,NA,gi|444242218,dbpA,ko:K05591,ATP-dependent 23S rRNA helicase DbpA,- none -,locus|B878_01154,
,NA,NA,NA,gi|444242234,ytfM,ko:K07278,Uncharacterized protein YtfM precursor,Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster),locus|B878_01244,
,NA,NA,NA,gi|444242235,NA,ko:K09800,Uncharacterized protein YtfN,Cluster Ytf and putative sugar transporter;
Putative sugar ABC transporter (ytf cluster),locus|B878_01249,
,NA,NA,NA,gi|444242300,VP1313,NA,FIG01200147: hypothetical protein,- none -,locus|B878_00090,
,NA,NA,NA,gi|444242308,NA,NA,hypothetical protein,- none -,locus|B878_00130,
,NA,NA,NA,gi|444242325,NA,ko:K00451,"Homogentisate 1,2-dioxygenase (EC 1.13.11.5)",Homogentisate pathway of aromatic compound degradation,locus|B878_00215,
,NA,NA,NA,gi|444242371,NA,NA,Sigma-54 dependent transcriptional regulator SypG,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00445,
,NA,NA,NA,gi|444242374,NA,NA,Periplasmic protein SypC involved in polysaccharide export,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00460,
,NA,NA,NA,gi|444242443,NA,NA,FIG01202703: hypothetical protein,- none -,locus|B878_00830,
,NA,NA,NA,gi|444237609,NA,ko:K00135,Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16),- none -,locus|B878_24075,
,NA,NA,NA,gi|444237627,NA,NA,hypothetical protein,- none -,locus|B878_24005,
,NA,NA,NA,gi|444237827,NA,NA,hypothetical protein,- none -,locus|B878_23063,
,NA,NA,NA,gi|444237867,cqsS,ko:K10916,Sensor histidine kinase CqsS,- none -,locus|B878_22951,
,NA,NA,NA,gi|444237958,NA,NA,Putative adhesin,- none -,locus|B878_22527,
,NA,NA,NA,gi|444237996,NA,NA,FIG01202050: hypothetical protein,- none -,locus|B878_22327,
,NA,NA,NA,gi|444238024,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238149,NA,ko:K13009,Lipid A core-O-antigen ligase,- none -,locus|B878_21543,
,NA,NA,NA,gi|444238195,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238221,NA,NA,GCN5-related N-acetyltransferase,- none -,locus|B878_21199,
,NA,NA,NA,gi|444238224,NA,ko:K07274,FIG01201336: hypothetical protein,- none -,locus|B878_21214,
,NA,NA,NA,gi|444238270,plsB,ko:K00631,Glycerol-3-phosphate acyltransferase (EC 2.3.1.15),Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_21005,
,NA,NA,NA,gi|444238281,NA,NA,FIG116849: hypothetical protein,- none -,locus|B878_20910,
,NA,NA,NA,gi|444238337,coxB,ko:K02275,Cytochrome c oxidase polypeptide II (EC 1.9.3.1),CBSS-316057.3.peg.563;
Terminal cytochrome C oxidases,locus|B878_20670,
,NA,NA,NA,gi|444238343,VVA1110,NA,Hypotehtical protein in Cytochrome oxidase biogenesis cluster,Biogenesis of cytochrome c oxidases,locus|B878_20700,
,NA,NA,NA,gi|444238344,NA,ko:K02259,"Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA",Biogenesis of cytochrome c oxidases,locus|B878_20705,
,NA,NA,NA,gi|444238409,NA,NA,TraF-related protein,- none -,locus|B878_20260,
,NA,NA,NA,gi|444238461,lpxL,ko:K02517,Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-),- none -,locus|B878_20145,
,NA,NA,NA,gi|444238584,NA,NA,Putative transport protein,- none -,locus|B878_19420,
,NA,NA,NA,gi|444238622,hrpA,ko:K03578,ATP-dependent helicase HrpA,- none -,locus|B878_19400,
,NA,NA,NA,gi|444238651,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238731,NA,NA,Sensory box/GGDEF family protein,- none -,locus|B878_18695,
,NA,NA,NA,gi|444238733,sdaC,ko:K03837,Serine transporter,Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions,locus|B878_18705,
,NA,NA,NA,gi|444238753,NA,NA,Chromosome segregation ATPase,- none -,locus|B878_18590,
,NA,NA,NA,gi|444238764,NA,ko:K14645,Alkaline serine exoprotease A precursor (EC 3.4.21.-),- none -,locus|B878_18655,
,NA,NA,NA,gi|444238832,arsB,ko:K03325,Arsenical-resistance protein ACR3,Arsenic resistance,locus|B878_18298,
,NA,NA,NA,gi|444238886,flgA,ko:K02386,Flagellar basal-body P-ring formation protein FlgA,Flagellum,locus|B878_18011,
,NA,NA,NA,gi|444238956,NA,ko:K02003,"ABC transporter, ATP-binding protein",- none -,locus|B878_17641,
,NA,NA,NA,gi|444238971,celB,ko:K02761,"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)",Beta-Glucoside Metabolism,locus|B878_17474,
,NA,NA,NA,gi|444239126,NA,NA,FIG004599: Hypothetical protein,CBSS-342610.3.peg.1536,locus|B878_16615,
,NA,NA,NA,gi|444239213,NA,ko:K04069,radical activating enzyme,- none -,locus|B878_16440,
,NA,NA,NA,gi|444239363,NA,NA,Putative inner membrane protein,- none -,locus|B878_15720,
,NA,NA,NA,gi|444239425,uspB,ko:K06144,Universal stress protein B,- none -,locus|B878_15380,
,NA,NA,NA,gi|444239436,NA,NA,CBSS-345074.3.peg.1627: Cysteine desulfurase (EC 2.8.1.7),- none -,locus|B878_15125,
,NA,NA,NA,gi|444239470,NA,NA,non-ribosomal peptide synthetase,- none -,locus|B878_15025,
,NA,NA,NA,gi|444239505,NA,NA,GGDEF family protein,- none -,locus|B878_14910,
,NA,NA,NA,gi|444239511,NA,ko:K02015,Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3),- none -,locus|B878_14940,
,NA,NA,NA,gi|444239542,NA,NA,FIG01199939: hypothetical protein,- none -,locus|B878_14810,
,NA,NA,NA,gi|444239590,NA,NA,putative transport protein,- none -,locus|B878_14385,
,NA,NA,NA,gi|444239646,NA,ko:K03933,Spindolin-related protein,- none -,locus|B878_14245,
,NA,NA,NA,gi|444239650,NA,NA,"ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp",- none -,locus|B878_14265,
,NA,NA,NA,gi|444239706,NA,NA,putative fimbrial chaperone protein,- none -,locus|B878_13785,
,NA,NA,NA,gi|444239707,NA,NA,type 1 fimbriae anchoring protein FimD,Type 1 pili (mannose-sensitive fimbriae),locus|B878_13790,
,NA,NA,NA,gi|444239714,VPA1172,NA,hypothetical protein,- none -,locus|B878_13825,
,NA,NA,NA,gi|444239838,pilP,ko:K02665,Type IV pilus biogenesis protein PilP,Type IV pilus,locus|B878_13205,
,NA,NA,NA,gi|444239876,VC1997,NA,FIG01200921: hypothetical protein,- none -,locus|B878_12985,
,NA,NA,NA,gi|444239960,NA,ko:K16263,Amino acid transporter,- none -,locus|B878_12560,
,NA,NA,NA,gi|444240051,NA,NA,FIG01200268: hypothetical protein,- none -,locus|B878_12285,
,NA,NA,NA,gi|444240067,yddG,NA,Permease of the drug/metabolite transporter (DMT) superfamily,- none -,locus|B878_11958,
,NA,NA,NA,gi|444240118,ygaD,"ko:K06147,ko:K06148","ABC-type multidrug transport system, ATPase and permease component",- none -,locus|B878_11813,
,NA,NA,NA,gi|444240157,NA,NA,hypothetical protein,- none -,locus|B878_11618,
,NA,NA,NA,gi|444240192,cyoB,ko:K02298,"Cytochrome bo(3) ubiquinol oxidase (EC 7.1.1.3), subunit 1",Terminal cytochrome O ubiquinol oxidase;
Terminal cytochrome oxidases,locus|B878_11378,
,NA,NA,NA,gi|444240215,NA,NA,diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s),Bacterial hemoglobins,locus|B878_11503,
,NA,NA,NA,gi|444240238,fliE,ko:K02408,Flagellar hook-basal body complex protein FliE,Flagellum;
Flagellum in Campylobacter,locus|B878_11143,
,NA,NA,NA,gi|444240389,thiK,NA,Thiamine kinase (EC 2.7.1.89) @ Adenosylcobinamide kinase (EC 2.7.1.156),Thiamin biosynthesis,locus|B878_10457,
,NA,NA,NA,gi|444240510,NA,NA,Glycosyltransferase,- none -,locus|B878_10072,
,NA,NA,NA,gi|444240586,barA,ko:K07678,BarA sensory histidine kinase (= VarS = GacS),- none -,locus|B878_09552,
,NA,NA,NA,gi|444240610,NA,NA,FIG01201498: hypothetical protein,- none -,locus|B878_09152,
,NA,NA,NA,gi|444240731,NA,ko:K20962,GGDEF family protein,- none -,locus|B878_08650,
,NA,NA,NA,gi|444240776,NA,"ko:K02026,ko:K10119","ABC-type sugar transport system, permease component",- none -,locus|B878_08275,
,NA,NA,NA,gi|444240818,NA,NA,FOG: TPR repeat,- none -,locus|B878_08495,
,NA,NA,NA,gi|444240861,NA,ko:K03496,ParA-like protein,Bacterial Cytoskeleton;
Cell Division Subsystem including YidCD,locus|B878_08090,
,NA,NA,NA,gi|444240870,ccmF,ko:K02198,Cytochrome c heme lyase subunit CcmF,Biogenesis of c-type cytochromes;
Copper homeostasis,locus|B878_08135,
,NA,NA,NA,gi|444241034,NA,NA,Membrane-fusion protein,- none -,locus|B878_07120,
,NA,NA,NA,gi|444241144,NA,NA,Type IV prepilin peptidase TadV/CpaA,Widespread colonization island,locus|B878_06381,
,NA,NA,NA,gi|444241176,NA,NA,hypothetical protein,- none -,locus|B878_06551,
,NA,NA,NA,gi|444241353,NA,ko:K00347,Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-),Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes,locus|B878_05407,
,NA,NA,NA,gi|444241419,NA,NA,FIG01207309: hypothetical protein,- none -,locus|B878_04987,
,NA,NA,NA,gi|444241468,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444241495,NA,NA,FIG01200138: hypothetical protein,- none -,locus|B878_04656,
,NA,NA,NA,gi|444241533,irgA,ko:K16089,Colicin I receptor precursor,Ton and Tol transport systems,locus|B878_04846,
,NA,NA,NA,gi|444241544,NA,NA,putative outermembrane protein,- none -,locus|B878_04901,
,NA,NA,NA,gi|444241549,NA,NA,Permease of the drug/metabolite transporter (DMT) superfamily,- none -,locus|B878_04171,
,NA,NA,NA,gi|444241573,NA,ko:K20988,"Capsular polysaccharide synthesis enzyme CpsC, polysaccharide export",Exopolysaccharide Biosynthesis;
Vibrio Polysaccharide (VPS) Biosynthesis,locus|B878_04291,
,NA,NA,NA,gi|444241684,NA,NA,"ABC transporter, ATP-binding protein",- none -,locus|B878_03986,
,NA,NA,NA,gi|444241820,ybjE,NA,Putative surface protein,- none -,locus|B878_02926,
,NA,NA,NA,gi|444241855,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444241962,NA,ko:K03561,"Ferric siderophore transport system, biopolymer transport protein ExbB",Ton and Tol transport systems,locus|B878_02801,
,NA,NA,NA,gi|444241966,yejB,ko:K13894,"ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)",ABC transporter oligopeptide (TC 3.A.1.5.1),locus|B878_02821,
,NA,NA,NA,gi|444242063,NA,ko:K03220,"Type III secretion inner membrane protein (YscD,homologous to flagellar export components)",- none -,locus|B878_02406,
,NA,NA,NA,gi|444242071,NA,NA,FIG01200289: hypothetical protein,- none -,locus|B878_01494,
,NA,NA,NA,gi|444242073,NA,NA,FIG01199712: hypothetical protein,- none -,locus|B878_01504,
,NA,NA,NA,gi|444242163,NA,NA,glycosyltransferase( EC:2.4.1.- ),- none -,locus|B878_00869,
,NA,NA,NA,gi|444242370,sypH,NA,Glycosyltransferase (EC 2.4.1.-) SypH,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00440,
,NA,NA,NA,gi|444237517,tuf,ko:K02358,NA,NA,NA,
,NA,NA,NA,gi|444237548,NA,NA,hypothetical protein,- none -,locus|B878_24308,
,NA,NA,NA,gi|444237553,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237620,NA,NA,hypothetical protein,- none -,locus|B878_24055,
,NA,NA,NA,gi|444237632,napB,ko:K02568,Nitrate reductase cytochrome c550-type subunit,Nitrate and nitrite ammonification,locus|B878_23988,
,NA,NA,NA,gi|444237648,NA,NA,Oxalate/formate antiporter,- none -,locus|B878_23918,
,NA,NA,NA,gi|444237674,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237675,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237708,srkA,NA,"YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling",- none -,locus|B878_23643,
,NA,NA,NA,gi|444237732,NA,NA,ubiE/COQ5 methyltransferase,- none -,locus|B878_23578,
,NA,NA,NA,gi|444237737,truA,ko:K06173,tRNA pseudouridine synthase A (EC 4.2.1.70),Colicin V and Bacteriocin Production Cluster;
tRNA modification Archaea;
tRNA processing,locus|B878_23523,
,NA,NA,NA,gi|444237798,NA,NA,Outer membrane lipoprotein-sorting protein,- none -,locus|B878_23233,
,NA,NA,NA,gi|444237817,NA,ko:K00020,2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60),"D-galactarate, D-glucarate and D-glycerate catabolism;
D-galactarate, D-glucarate and D-glycerate catabolism - gjo;
Glycerate metabolism",locus|B878_23183,
,NA,NA,NA,gi|444237855,ycfH,ko:K03424,Putative deoxyribonuclease YcfH,YcfH,locus|B878_22971,
,NA,NA,NA,gi|444237921,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237947,flgJ,ko:K02395,Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-),Flagellum,locus|B878_22562,
,NA,NA,NA,gi|444237949,flgL,ko:K02397,Flagellar hook-associated protein FlgL,Flagellum,locus|B878_22572,
,NA,NA,NA,gi|444237963,NA,NA,Lactoylglutathione lyase,- none -,locus|B878_22437,
,NA,NA,NA,gi|444237967,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444237973,repA,NA,Replication protein,- none -,locus|B878_22497,
,NA,NA,NA,gi|444238028,NA,ko:K00799,Maleylacetoacetate isomerase (EC 5.2.1.2) / Glutathione S-transferase,Homogentisate pathway of aromatic compound degradation;
Salicylate and gentisate catabolism,locus|B878_22182,
,NA,NA,NA,gi|444238030,vmrA,NA,"Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps","Multidrug Resistance Efflux Pumps;
Riboflavin, FMN and FAD metabolism Extended",locus|B878_22192,
,NA,NA,NA,gi|444238034,NA,NA,hypothetical protein,- none -,locus|B878_22212,
,NA,NA,NA,gi|444238038,hutI,ko:K01468,Imidazolonepropionase (EC 3.5.2.7),Histidine Degradation,locus|B878_22077,
,NA,NA,NA,gi|444238041,hutH,ko:K01745,Histidine ammonia-lyase (EC 4.3.1.3),Histidine Degradation,locus|B878_22092,
,NA,NA,NA,gi|444238043,NA,NA,FIG01206397: hypothetical protein,- none -,locus|B878_22102,
,NA,NA,NA,gi|444238048,VV1050,NA,Chromosome segregation ATPase,- none -,locus|B878_22007,
,NA,NA,NA,gi|444238052,rnd,ko:K03684,Ribonuclease D (EC 3.1.26.3),tRNA processing,locus|B878_22027,
,NA,NA,NA,gi|444238063,glpD,ko:K00111,Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3),Glycerol and Glycerol-3-phosphate Uptake and Utilization;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria;
Respiratory dehydrogenases 1,locus|B878_21952,
,NA,NA,NA,gi|444238064,glpR,ko:K02444,"Glycerol-3-phosphate regulon repressor, DeoR family",Glycerol and Glycerol-3-phosphate Uptake and Utilization,locus|B878_21957,
,NA,NA,NA,gi|444238071,BT0174,NA,NifU-related domain containing protein,- none -,locus|B878_21992,
,NA,NA,NA,gi|444238094,NA,NA,Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein,"Proline, 4-hydroxyproline uptake and utilization",locus|B878_21827,
,NA,NA,NA,gi|444238145,NA,ko:K09712,Hemolysin,- none -,locus|B878_21652,
,NA,NA,NA,gi|444238180,thiF,ko:K03148,Sulfur carrier protein adenylyltransferase ThiF,Thiamin biosynthesis,locus|B878_21429,
,NA,NA,NA,gi|444238198,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238199,NA,NA,GTP-binding protein TypA/BipA,Universal GTPases,locus|B878_21274,
,NA,NA,NA,gi|444238210,NA,NA,VgrG protein,Type VI secretion systems;
USS-DB-7,locus|B878_21329,
,NA,NA,NA,gi|444238215,NA,NA,hypothetical protein,- none -,locus|B878_21254,
,NA,NA,NA,gi|444238220,NA,ko:K02433,Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7),"tRNA aminoacylation, Glu and Gln",locus|B878_21194,
,NA,NA,NA,gi|444238293,rpmG,ko:K02913,"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent",Ribosome LSU bacterial,locus|B878_20795,
,NA,NA,NA,gi|444238298,coaD,ko:K00954,Phosphopantetheine adenylyltransferase (EC 2.7.7.3),Coenzyme A Biosynthesis,locus|B878_20820,
,NA,NA,NA,gi|444238306,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444238324,comM,ko:K07391,"AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination",- none -,locus|B878_20770,
,NA,NA,NA,gi|444238330,NA,NA,2-keto-4-pentenoate hydratase (EC 4.2.1.-),- none -,locus|B878_20635,
,NA,NA,NA,gi|444238335,NA,NA,Histone acetyltransferase HPA2,- none -,locus|B878_20660,
,NA,NA,NA,gi|444238342,VVA1112,NA,"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion",Biogenesis of cytochrome c oxidases;
CBSS-316057.3.peg.563,locus|B878_20695,
,NA,NA,NA,gi|444238419,VPA0928,NA,FIG01200885: hypothetical protein,- none -,locus|B878_20310,
,NA,NA,NA,gi|444238429,NA,NA,COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA,EC699-706,locus|B878_20175,
,NA,NA,NA,gi|444238435,yiaW,NA,GTPase (EC 3.6.1.-),- none -,locus|B878_20205,
,NA,NA,NA,gi|444238438,NA,"ko:K16786,ko:K16787",Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter,ECF class transporters;
Methionine Biosynthesis,locus|B878_20220,
,NA,NA,NA,gi|444238449,NA,NA,hypothetical protein,- none -,locus|B878_20085,
,NA,NA,NA,gi|444238452,NA,NA,"COG3505: Type IV secretory pathway, VirD4 components",- none -,locus|B878_20100,
,NA,NA,NA,gi|444238466,codA,ko:K01485,Cytosine deaminase (EC 3.5.4.1),Creatine and Creatinine Degradation;
pyrimidine conversions,locus|B878_19950,
,NA,NA,NA,gi|444238479,NA,NA,"1,4-alpha-glucan branching enzyme (EC 2.4.1.18)",- none -,locus|B878_20015,
,NA,NA,NA,gi|444238481,NA,ko:K07661,Transcriptional regulatory protein RstA,Orphan regulatory proteins,locus|B878_20025,
,NA,NA,NA,gi|444238509,ybgI,NA,FIG137478: Hypothetical protein,- none -,locus|B878_19785,
,NA,NA,NA,gi|444238530,NA,NA,"Transcriptional regulator, DeoR family",- none -,locus|B878_19705,
,NA,NA,NA,gi|444238552,VC1707,NA,FIG01199551: hypothetical protein,- none -,locus|B878_19635,
,NA,NA,NA,gi|444238571,VP1985,NA,Serine/threonine protein kinase,- none -,locus|B878_19545,
,NA,NA,NA,gi|444238581,NA,NA,FIG01203160: hypothetical protein,- none -,locus|B878_19405,
,NA,NA,NA,gi|444238587,NA,NA,Transcriptional regulator,- none -,locus|B878_19435,
,NA,NA,NA,gi|444238667,PP5099,NA,FIG003551: hypothetical protein,- none -,locus|B878_19120,
,NA,NA,NA,gi|444238669,yggW,NA,"Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB",CBSS-630.2.peg.3360;
Heat shock dnaK gene cluster extended,locus|B878_19130,
,NA,NA,NA,gi|444238684,guaC,ko:K00364,GMP reductase (EC 1.7.1.7),- none -,locus|B878_18960,
,NA,NA,NA,gi|444238705,thiD,ko:K00941,Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7),Thiamin biosynthesis,locus|B878_18795,
,NA,NA,NA,gi|444238728,NA,NA,FIG01203988: hypothetical protein,- none -,locus|B878_18680,
,NA,NA,NA,gi|444238732,sdaA,ko:K01752,"L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17)",Glycine and Serine Utilization;
Pyruvate Alanine Serine Interconversions,locus|B878_18700,
,NA,NA,NA,gi|444238736,NA,NA,Probable sensor/response regulator hybrid,- none -,locus|B878_18720,
,NA,NA,NA,gi|444238752,NA,NA,FIG01199787: hypothetical protein,- none -,locus|B878_18585,
,NA,NA,NA,gi|444238754,NA,NA,FIG01202308: hypothetical protein,- none -,locus|B878_18595,
,NA,NA,NA,gi|444238757,NA,ko:K01883,Cysteinyl-tRNA synthetase (EC 6.1.1.16),Zinc regulated enzymes,locus|B878_18610,
,NA,NA,NA,gi|444238761,NA,ko:K03451,High-affinity choline uptake protein BetT,Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_18630,
,NA,NA,NA,gi|444238773,NA,NA,hypothetical protein,- none -,locus|B878_18478,
,NA,NA,NA,gi|444238823,VVA1143,ko:K03307,"sodium-solute symporter, putative",- none -,locus|B878_18243,
,NA,NA,NA,gi|444238824,NA,ko:K00874,2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45),D-gluconate and ketogluconates metabolism;
Entner-Doudoroff Pathway,locus|B878_18248,
,NA,NA,NA,gi|444238869,NA,NA,FIG01200462: hypothetical protein,- none -,locus|B878_17926,
,NA,NA,NA,gi|444238893,flgD,ko:K02389,Flagellar basal-body rod modification protein FlgD,Flagellar motility;
Flagellum,locus|B878_18046,
,NA,NA,NA,gi|444238902,NA,NA,FIG01203211: hypothetical protein,- none -,locus|B878_17846,
,NA,NA,NA,gi|444238920,NA,ko:K10126,Putative two-component response regulator,- none -,locus|B878_17701,
,NA,NA,NA,gi|444238934,NA,NA,Transcriptional regulator,- none -,locus|B878_17781,
,NA,NA,NA,gi|444238945,NA,ko:K02031,"Peptide ABC transporter, ATP-binding protein",- none -,locus|B878_17586,
,NA,NA,NA,gi|444238976,lptG,ko:K11720,FIG000906: Predicted Permease,- none -,locus|B878_17499,
,NA,NA,NA,gi|444239023,recJ,ko:K07462,Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-),"DNA-replication;
DNA Repair Base Excision;
DNA repair, bacterial RecFOR pathway",locus|B878_17224,
,NA,NA,NA,gi|444239060,aceB,ko:K01638,Malate synthase (EC 2.3.3.9),Glyoxylate bypass,locus|B878_17150,
,NA,NA,NA,gi|444239069,pilC,ko:K02653,Type IV fimbrial assembly protein PilC,Type IV pilus,locus|B878_16915,
,NA,NA,NA,gi|444239075,trmD,ko:K00554,tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31),Ribosome biogenesis bacterial;
tRNA modification Archaea,locus|B878_16945,
,NA,NA,NA,gi|444239089,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239110,C0585,NA,FIG01200298: hypothetical protein,- none -,locus|B878_16845,
,NA,NA,NA,gi|444239125,dnaQ,ko:K02342,DNA polymerase III epsilon subunit (EC 2.7.7.7),CBSS-228410.1.peg.134;
CBSS-342610.3.peg.1536;
DNA-replication,locus|B878_16610,
,NA,NA,NA,gi|444239166,NA,NA,ATP-dependent RNA helicase VCA0990,"ATP-dependent RNA helicases, bacterial",locus|B878_16490,
,NA,NA,NA,gi|444239194,NA,NA,Chaperone protein DnaK,Heat shock dnaK gene cluster extended;
Protein chaperones,locus|B878_16345,
,NA,NA,NA,gi|444239230,NA,NA,Hypothetical protein VC0266 (sugar utilization related?),VC0266,locus|B878_16255,
,NA,NA,NA,gi|444239231,NA,NA,D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95),Glycine and Serine Utilization;
Pyridoxin (Vitamin B6) Biosynthesis;
Serine Biosynthesis,locus|B878_16260,
,NA,NA,NA,gi|444239242,cadA,ko:K01582,lysine decarboxylase( EC:4.1.1.18 ),- none -,locus|B878_16315,
,NA,NA,NA,gi|444239261,mshM,ko:K12283,MSHA biogenesis protein MshM,Mannose-sensitive hemagglutinin type 4 pilus,locus|B878_16135,
,NA,NA,NA,gi|444239272,NA,ko:K06987,Predicted deacylase,- none -,locus|B878_15910,
,NA,NA,NA,gi|444239293,yfjF,ko:K09801,UPF0125 protein yfjF,- none -,locus|B878_16015,
,NA,NA,NA,gi|444239339,cyaY,ko:K06202,"Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly",Biogenesis of cytochrome c oxidases,locus|B878_15600,
,NA,NA,NA,gi|444239365,NA,ko:K05595,MarC family integral membrane protein,- none -,locus|B878_15730,
,NA,NA,NA,gi|444239446,NA,ko:K01113,Phosphodiesterase/alkaline phosphatase D,- none -,locus|B878_15175,
,NA,NA,NA,gi|444239453,VV12383,NA,FIG01199672: hypothetical protein,- none -,locus|B878_15210,
,NA,NA,NA,gi|444239462,cdd,ko:K01489,Cytidine deaminase (EC 3.5.4.5),Murein hydrolase regulation and cell death;
pyrimidine conversions,locus|B878_14985,
,NA,NA,NA,gi|444239526,NA,ko:K02111,ATP synthase alpha chain (EC 3.6.3.14),F0F1-type ATP synthase,locus|B878_14730,
,NA,NA,NA,gi|444239532,NA,ko:K19610,Copper-sensing two-component system response regulator CpxR,Orphan regulatory proteins,locus|B878_14760,
,NA,NA,NA,gi|444239534,NA,ko:K16087,Enterobactin receptor VctA,- none -,locus|B878_14770,
,NA,NA,NA,gi|444239541,yccS,NA,Putative efflux (PET) family inner membrane protein YccS,- none -,locus|B878_14805,
,NA,NA,NA,gi|444239566,murQ,ko:K07106,N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126),Recycling of Peptidoglycan Amino Sugars;
UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis,locus|B878_14640,
,NA,NA,NA,gi|444239570,tyrA,ko:K14187,Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43),Chorismate Synthesis;
Chorismate Synthesis;
Phenylalanine and Tyrosine Branches from Chorismate;
Phenylalanine and Tyrosine Branches from Chorismate,locus|B878_14660,
,NA,NA,NA,gi|444239586,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239591,NA,NA,FIG01199759: hypothetical protein,- none -,locus|B878_14390,
,NA,NA,NA,gi|444239593,NA,NA,Glutathione S-transferase domain protein,CBSS-89187.3.peg.2957,locus|B878_14400,
,NA,NA,NA,gi|444239599,NA,NA,Nudix hydrolase family protein,- none -,locus|B878_14430,
,NA,NA,NA,gi|444239618,NA,ko:K02015,Ferrichrome ABC transporter (permease) PvuC,Vibrioferrin synthesis,locus|B878_14525,
,NA,NA,NA,gi|444239626,NA,NA,Lactoylglutathione lyase,- none -,locus|B878_14145,
,NA,NA,NA,gi|444239647,NA,NA,"Transcriptional regulator, AsnC family",- none -,locus|B878_14250,
,NA,NA,NA,gi|444239694,NA,NA,Radical SAM domain protein,- none -,locus|B878_14105,
,NA,NA,NA,gi|444239697,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444239724,NA,NA,hypothetical protein,- none -,locus|B878_13875,
,NA,NA,NA,gi|444239733,NA,ko:K03502,"Error-prone, lesion bypass DNA polymerase V (UmuC)","DNA repair, bacterial UmuCD system",locus|B878_13920,
,NA,NA,NA,gi|444239790,ruvC,ko:K01159,Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4),DNA-replication;
RuvABC plus a hypothetical,locus|B878_13370,
,NA,NA,NA,gi|444239794,cmoB,ko:K15257,tRNA ho5U(34) carboxymethyltransferase,- none -,locus|B878_13390,
,NA,NA,NA,gi|444239798,NA,NA,putative phospholipase C precursor,- none -,locus|B878_13410,
,NA,NA,NA,gi|444239811,NA,NA,"Beta-ketoadipate enol-lactone hydrolase, putative",- none -,locus|B878_13475,
,NA,NA,NA,gi|444239819,aat,ko:K00684,Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6),Protein degradation,locus|B878_13515,
,NA,NA,NA,gi|444239858,metJ,ko:K03764,Methionine repressor MetJ,Methionine Biosynthesis,locus|B878_13305,
,NA,NA,NA,gi|444239870,topB,ko:K03169,DNA topoisomerase III (EC 5.99.1.2),DNA processing cluster,locus|B878_12955,
,NA,NA,NA,gi|444239912,dadA,ko:K00285,D-amino acid dehydrogenase small subunit (EC 1.4.99.1),Pyruvate Alanine Serine Interconversions;
Respiratory dehydrogenases 1,locus|B878_12755,
,NA,NA,NA,gi|444239922,NA,ko:K01872,Predicted metal-dependent hydrolase,- none -,locus|B878_12805,
,NA,NA,NA,gi|444239929,rlmN,ko:K06941,23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) ## RlmN,Conserved gene cluster associated with Met-tRNA formyltransferase,locus|B878_12840,
,NA,NA,NA,gi|444239947,codA,ko:K01485,NA,NA,NA,
,NA,NA,NA,gi|444239974,luxP,ko:K10910,Autoinducer 2-binding periplasmic protein LuxP precursor,Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon),locus|B878_12630,
,NA,NA,NA,gi|444240002,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240020,mtgA,ko:K03814,Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-),Peptidoglycan Biosynthesis,locus|B878_12480,
,NA,NA,NA,gi|444240064,adhB,ko:K13954,Alcohol dehydrogenase (EC 1.1.1.1),Fermentations: Mixed acid;
Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_11943,
,NA,NA,NA,gi|444240065,elbB,NA,Sigma cross-reacting protein 27A,- none -,locus|B878_11948,
,NA,NA,NA,gi|444240074,phhB,ko:K01724,Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96),- none -,locus|B878_11993,
,NA,NA,NA,gi|444240134,acyP,ko:K01512,"Acylphosphate phosphohydrolase (EC 3.6.1.7), putative","Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_11893,
,NA,NA,NA,gi|444240145,NA,NA,FIG01205237: hypothetical protein,- none -,locus|B878_11558,
,NA,NA,NA,gi|444240158,NA,NA,serine/threonine kinase,- none -,locus|B878_11623,
,NA,NA,NA,gi|444240161,NA,NA,FIG01206310: hypothetical protein,- none -,locus|B878_11638,
,NA,NA,NA,gi|444240209,NA,NA,Permease of the drug/metabolite transporter (DMT) superfamily,- none -,locus|B878_11473,
,NA,NA,NA,gi|444240218,NA,NA,"Transcriptional regulator, AraC family",- none -,locus|B878_11518,
,NA,NA,NA,gi|444240227,NA,ko:K15536,Soluble cytochrome b562,Soluble cytochromes and functionally related electron carriers,locus|B878_11088,
,NA,NA,NA,gi|444240249,NA,NA,Flagellin protein FlaA,Flagellum;
Flagellum in Campylobacter,locus|B878_11198,
,NA,NA,NA,gi|444240271,NA,NA,putative integral membrane protein,- none -,locus|B878_11308,
,NA,NA,NA,gi|444240273,VPA0274,ko:K02397,NA,NA,NA,
,NA,NA,NA,gi|444240287,hmp,ko:K05916,Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17),Bacterial hemoglobins;
Flavohaemoglobin;
Glutaredoxins,locus|B878_10876,
,NA,NA,NA,gi|444240297,astA,ko:K00673,Arginine N-succinyltransferase (EC 2.3.1.109),Arginine and Ornithine Degradation,locus|B878_10926,
,NA,NA,NA,gi|444240306,kefG,ko:K11748,Glutathione-regulated potassium-efflux system ancillary protein KefG,Glutathione-regulated potassium-efflux system and associated functions;
Potassium homeostasis,locus|B878_10971,
,NA,NA,NA,gi|444240310,iaaA,ko:K13051,Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase,Protein degradation,locus|B878_10991,
,NA,NA,NA,gi|444240323,NA,ko:K03406,Methyl-accepting chemotaxis protein,- none -,locus|B878_10567,
,NA,NA,NA,gi|444240324,NA,NA,HPT domain containing protein,- none -,locus|B878_10572,
,NA,NA,NA,gi|444240326,NA,ko:K10218,hypothetical protein,- none -,locus|B878_10582,
,NA,NA,NA,gi|444240333,sbcC,ko:K03546,Exonuclease SbcC,"DNA repair, bacterial",locus|B878_10617,
,NA,NA,NA,gi|444240345,NA,ko:K01515,ADP-ribose pyrophosphatase (EC 3.6.1.13),CBSS-342610.3.peg.1794;
NAD and NADP cofactor biosynthesis global;
Nudix proteins (nucleoside triphosphate hydrolases),locus|B878_10677,
,NA,NA,NA,gi|444240347,yieM,NA,FIG01199837: hypothetical protein,- none -,locus|B878_10687,
,NA,NA,NA,gi|444240349,NA,NA,"Predicted Lactate-responsive regulator, LysR family",Lactate utilization,locus|B878_10697,
,NA,NA,NA,gi|444240360,NA,NA,Methyl-accepting chemotaxis protein,- none -,locus|B878_10752,
,NA,NA,NA,gi|444240368,NA,NA,FIG01201902: hypothetical protein,- none -,locus|B878_10792,
,NA,NA,NA,gi|444240377,msbA,ko:K11085,Lipid A export ATP-binding/permease protein MsbA,- none -,locus|B878_10397,
,NA,NA,NA,gi|444240397,zntA,ko:K01534,"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)",Copper homeostasis,locus|B878_10497,
,NA,NA,NA,gi|444240418,NA,ko:K07258,D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4),CBSS-84588.1.peg.1247;
Murein Hydrolases;
Peptidoglycan Biosynthesis,locus|B878_10112,
,NA,NA,NA,gi|444240424,NA,NA,hypothetical protein,- none -,locus|B878_10142,
,NA,NA,NA,gi|444240428,NA,NA,UPF0028 protein YchK,- none -,locus|B878_10162,
,NA,NA,NA,gi|444240429,NA,ko:K09823,Zinc uptake regulation protein ZUR,Oxidative stress;
Zinc regulated enzymes,locus|B878_10167,
,NA,NA,NA,gi|444240432,NA,NA,"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family",Zinc regulated enzymes,locus|B878_10182,
,NA,NA,NA,gi|444240447,NA,NA,"ABC-type transport system, ATPase component",- none -,locus|B878_10257,
,NA,NA,NA,gi|444240472,NA,NA,FIG01200531: hypothetical protein,- none -,locus|B878_09872,
,NA,NA,NA,gi|444240478,NA,NA,TPR domain protein,- none -,locus|B878_09902,
,NA,NA,NA,gi|444240482,NA,NA,Membrane fusion protein of RND family multidrug efflux pump,Multidrug Resistance Efflux Pumps,locus|B878_09922,
,NA,NA,NA,gi|444240538,fbpC,ko:K02010,"Ferric iron ABC transporter, ATP-binding protein",Iron acquisition in Streptococcus;
Transport of Iron,locus|B878_09777,
,NA,NA,NA,gi|444240582,era,ko:K03595,GTP-binding protein Era,Bacterial Cell Division;
CBSS-176299.4.peg.1292;
Universal GTPases;
tRNA modification Archaea,locus|B878_09532,
,NA,NA,NA,gi|444240588,relA,ko:K00951,"GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I","CBSS-176299.4.peg.1292;
Plastidial (p)ppGpp-mediated response in plants;
Stringent Response, (p)ppGpp metabolism",locus|B878_09562,
,NA,NA,NA,gi|444240607,NA,ko:K08604,"Vibriolysin, extracellular zinc protease (EC 3.4.24.25) @ Pseudolysin, extracellular zinc protease (EC 3.4.24.26)",EC 3.4.24.- Metalloendopeptidases;
EC 3.4.24.- Metalloendopeptidases,locus|B878_09137,
,NA,NA,NA,gi|444240639,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240660,NA,NA,NA,NA,NA,
,NA,NA,NA,gi|444240696,NA,ko:K03321,Sulfate permease,Cysteine Biosynthesis,locus|B878_09060,
,NA,NA,NA,gi|444240702,rpmF,ko:K02911,LSU ribosomal protein L32p,Ribosome LSU bacterial,locus|B878_09090,
,NA,NA,NA,gi|444240730,NA,NA,Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2),Isoprenoid Biosynthesis,locus|B878_08645,
,NA,NA,NA,gi|444240741,yfiQ,ko:K09181,Protein acetyltransferase,"Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate",locus|B878_08730,
,NA,NA,NA,gi|444240745,yciH,ko:K03113,Translation initiation factor SUI1-related protein,- none -,locus|B878_08750,
,NA,NA,NA,gi|444240793,NA,NA,FIG01201447: hypothetical protein,- none -,locus|B878_08360,
,NA,NA,NA,gi|444240824,NA,NA,"Transcriptional regulator, MarR family",- none -,locus|B878_08525,
,NA,NA,NA,gi|444240836,flrC,ko:K10943,Flagellar regulatory protein FleQ,Flagellum,locus|B878_07965,
,NA,NA,NA,gi|444240843,NA,NA,FIG01201985: hypothetical protein,- none -,locus|B878_08000,
,NA,NA,NA,gi|444240846,fliM,ko:K02416,Flagellar motor switch protein FliM,Bacterial Chemotaxis;
Flagellar motility;
Flagellum,locus|B878_08015,
,NA,NA,NA,gi|444240847,fliN,ko:K02417,Flagellar motor switch protein FliN,Bacterial Chemotaxis;
Flagellar motility;
Flagellum,locus|B878_08020,
,NA,NA,NA,gi|444240856,fliA,ko:K02405,RNA polymerase sigma factor for flagellar operon,"Flagellar motility;
Flagellum;
Transcription initiation, bacterial sigma factors",locus|B878_08065,
,NA,NA,NA,gi|444240860,cheB,ko:K03412,Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61),Bacterial Chemotaxis,locus|B878_08085,
,NA,NA,NA,gi|444240915,NA,NA,"ABC-type amino acid transport, signal transduction systems, periplasmic component/domain",- none -,locus|B878_07750,
,NA,NA,NA,gi|444240964,fumC,ko:K01679,Fumarate hydratase class II (EC 4.2.1.2),TCA Cycle,locus|B878_07405,
,NA,NA,NA,gi|444240976,sodA,ko:K04564,Manganese superoxide dismutase (EC 1.15.1.1),Oxidative stress;
Protection from Reactive Oxygen Species,locus|B878_07465,
,NA,NA,NA,gi|444240979,cpxP,ko:K06006,"P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- resistance associated protein",- none -,locus|B878_07480,
,NA,NA,NA,gi|444241000,envC,NA,"Cell wall endopeptidase, family M23/M37",- none -,locus|B878_07585,
,NA,NA,NA,gi|444241017,NA,ko:K01489,"blasticidin S deaminase, putative",- none -,locus|B878_07035,
,NA,NA,NA,gi|444241033,NA,NA,"Transcriptional regulator, TetR family",- none -,locus|B878_07115,
,NA,NA,NA,gi|444241089,thiL,ko:K00946,Thiamine-monophosphate kinase (EC 2.7.4.16),Thiamin biosynthesis,locus|B878_06753,
,NA,NA,NA,gi|444241114,gmhB,ko:K03273,"D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-)",Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis,locus|B878_06878,
,NA,NA,NA,gi|444241115,treR,ko:K03485,Trehalose operon transcriptional repressor,Trehalose Uptake and Utilization,locus|B878_06883,
,NA,NA,NA,gi|444241130,lptE,ko:K03643,LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B),Lipopolysaccharide assembly,locus|B878_06958,
,NA,NA,NA,gi|444241148,NA,ko:K02283,"Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily",Widespread colonization island,locus|B878_06411,
,NA,NA,NA,gi|444241157,betI,ko:K02167,HTH-type transcriptional regulator BetI,Choline and Betaine Uptake and Betaine Biosynthesis,locus|B878_06456,
,NA,NA,NA,gi|444241172,NA,NA,Sensor histidine kinase,- none -,locus|B878_06531,
,NA,NA,NA,gi|444241183,NA,NA,MutT/nudix family protein,- none -,locus|B878_06586,
,NA,NA,NA,gi|444241186,rbsA,ko:K10441,"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)",D-ribose utilization,locus|B878_06601,
,NA,NA,NA,gi|444241193,NA,ko:K00757,N-Ribosylnicotinamide phosphorylase (EC 2.4.2.1),NAD and NADP cofactor biosynthesis global,locus|B878_06636,
,NA,NA,NA,gi|444241200,cueR,ko:K19591,HTH-type transcriptional regulator cueR,- none -,locus|B878_06671,
,NA,NA,NA,gi|444241211,NA,NA,Response regulator,- none -,locus|B878_06038,
,NA,NA,NA,gi|444241255,polB,ko:K02336,DNA polymerase II (EC 2.7.7.7),DNA-replication;
DNA Repair Base Excision;
EC49-61,locus|B878_06268,
,NA,NA,NA,gi|444241282,NA,NA,FIG01201080: hypothetical protein,- none -,locus|B878_05734,
,NA,NA,NA,gi|444241302,yhbS,ko:K03824,Uncharacterized N-acetyltransferase YhbS,- none -,locus|B878_05834,
,NA,NA,NA,gi|444241310,rpsO,ko:K02956,SSU ribosomal protein S15p (S13e),Ribosome SSU bacterial,locus|B878_05884,
,NA,NA,NA,gi|444241324,dacB,ko:K07259,D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4),CBSS-84588.1.peg.1247;
Murein Hydrolases;
Peptidoglycan Biosynthesis,locus|B878_05954,
,NA,NA,NA,gi|444241325,VP2469,ko:K06213,Mg/Co/Ni transporter MgtE / CBS domain,- none -,locus|B878_05959,
,NA,NA,NA,gi|444241340,NA,ko:K06876,FIG004436: Protein related to deoxyribodipyrimidine photolyase,- none -,locus|B878_05337,
,NA,NA,NA,gi|444241345,NA,NA,diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s),Bacterial hemoglobins,locus|B878_05362,
,NA,NA,NA,gi|444241354,NA,NA,"Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component",- none -,locus|B878_05412,
,NA,NA,NA,gi|444241365,NA,ko:K09923,FIG01202576: hypothetical protein,- none -,locus|B878_05467,
,NA,NA,NA,gi|444241374,rimK,ko:K05844,Ribosomal protein S6--L-glutamate ligase,Ribosome biogenesis bacterial,locus|B878_05512,
,NA,NA,NA,gi|444241377,speA,ko:K01585,Biosynthetic arginine decarboxylase (EC 4.1.1.19),Arginine and Ornithine Degradation;
Polyamine Metabolism,locus|B878_05527,
,NA,NA,NA,gi|444241394,exbD2,ko:K03559,Biopolymer transport protein ExbD/TolR,Ton and Tol transport systems,locus|B878_05612,
,NA,NA,NA,gi|444241399,NA,NA,Probable two-component system sensor kinase,- none -,locus|B878_05637,
,NA,NA,NA,gi|444241449,NA,NA,FIG01202152: hypothetical protein,- none -,locus|B878_05137,
,NA,NA,NA,gi|444241452,NA,NA,"Phage terminase, endonuclease subunit",- none -,locus|B878_05152,
,NA,NA,NA,gi|444241454,NA,NA,Phage capsid scaffolding protein,Phage head and packaging,locus|B878_05162,
,NA,NA,NA,gi|444241467,NA,NA,Repressor protein,- none -,locus|B878_05237,
,NA,NA,NA,gi|444241475,NA,NA,Phage integrase,- none -,locus|B878_05277,
,NA,NA,NA,gi|444241479,VPA1512,NA,Extracellular solute binding protein ScrB,Control of Swarming in Vibrio and Shewanella species,locus|B878_05297,
,NA,NA,NA,gi|444241480,NA,NA,Aminotransferase ScrA,CBSS-84588.1.peg.1247;
Control of Swarming in Vibrio and Shewanella species,locus|B878_05302,
,NA,NA,NA,gi|444241496,NA,NA,Homeodomain-like,- none -,locus|B878_04661,
,NA,NA,NA,gi|444241538,entE,ko:K02363,"2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58)",- none -,locus|B878_04871,
,NA,NA,NA,gi|444241540,NA,NA,FIG01203597: hypothetical protein,- none -,locus|B878_04881,
,NA,NA,NA,gi|444241557,VVA0192,"ko:K11201,ko:K11202,ko:K11203","PTS system, fructose-specific IIA component (EC 2.7.1.69) / PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)",- none -,locus|B878_04211,
,NA,NA,NA,gi|444241562,NA,ko:K07119,Putative oxidoreductase YncB,Broadly distributed proteins not in subsystems,locus|B878_04236,
,NA,NA,NA,gi|444241576,NA,NA,hypothetical protein,- none -,locus|B878_04316,
,NA,NA,NA,gi|444241581,NA,NA,FIG00920059: hypothetical protein,- none -,locus|B878_04341,
,NA,NA,NA,gi|444241592,yedI,ko:K09781,FIG01199731: hypothetical protein,- none -,locus|B878_04396,
,NA,NA,NA,gi|444241612,hutX,ko:K07227,Putative heme iron utilization protein,- none -,locus|B878_04496,
,NA,NA,NA,gi|444241638,NA,NA,FIG01201735: hypothetical protein,- none -,locus|B878_03736,
,NA,NA,NA,gi|444241668,NA,NA,Putative LysR-family transcriptional regulator YidZ,- none -,locus|B878_03896,
,NA,NA,NA,gi|444241704,pncB,ko:K00763,Nicotinate phosphoribosyltransferase (EC 2.4.2.11),NAD and NADP cofactor biosynthesis global;
Redox-dependent regulation of nucleus processes,locus|B878_04096,
,NA,NA,NA,gi|444241723,NA,NA,FIG01199556: hypothetical protein,- none -,locus|B878_03291,
,NA,NA,NA,gi|444241724,glnB,ko:K04751,Nitrogen regulatory protein P-II,Ammonia assimilation,locus|B878_03296,
,NA,NA,NA,gi|444241729,rnhB,ko:K03470,Ribonuclease HII (EC 3.1.26.4),Conserved gene cluster associated with Met-tRNA formyltransferase;
Ribonuclease H,locus|B878_03321,
,NA,NA,NA,gi|444241800,NA,ko:K07014,Predicted hydrolase,- none -,locus|B878_03676,
,NA,NA,NA,gi|444241822,NA,ko:K01580,"Glutamate decarboxylase, eukaryotic type (EC 4.1.1.15)",- none -,locus|B878_02936,
,NA,NA,NA,gi|444241882,sapA,ko:K19226,"ABC transporter, substrate-binding protein or sensor protein SapA",Peptide ABC transport system Sap,locus|B878_03246,
,NA,NA,NA,gi|444241883,sapB,ko:K19227,Peptide transport system permease protein SapB,Peptide ABC transport system Sap,locus|B878_03251,
,NA,NA,NA,gi|444241903,SO4716,NA,FIG01200309: hypothetical protein,- none -,locus|B878_02506,
,NA,NA,NA,gi|444241905,engB,ko:K03978,GTP-binding protein EngB,Universal GTPases,locus|B878_02516,
,NA,NA,NA,gi|444241911,hemN,ko:K02495,"Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)",- none -,locus|B878_02546,
,NA,NA,NA,gi|444241921,NA,NA,FIG01200504: hypothetical protein,- none -,locus|B878_02596,
,NA,NA,NA,gi|444241954,recG,ko:K03655,ATP-dependent DNA helicase RecG (EC 3.6.1.-),DNA-replication,locus|B878_02761,
,NA,NA,NA,gi|444241983,NA,NA,FIG024285: Hypothetical protein,Putative oxidase COG2907,locus|B878_02006,
,NA,NA,NA,gi|444241986,NA,NA,"COG2907: Amine oxidase, flavin-containing",Putative oxidase COG2907,locus|B878_02021,
,NA,NA,NA,gi|444242006,miaE,ko:K06169,tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-),- none -,locus|B878_02121,
,NA,NA,NA,gi|444242029,NA,NA,Type III secretion host injection and negative regulator protein (YopD),- none -,locus|B878_02236,
,NA,NA,NA,gi|444242064,NA,ko:K03219,"Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)",- none -,locus|B878_02411,
,NA,NA,NA,gi|444242097,ftsQ,ko:K03589,Cell division protein FtsQ,Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ,locus|B878_01624,
,NA,NA,NA,gi|444242100,ftsW,ko:K03588,Cell division protein FtsW,Bacterial Cell Division;
Bacterial Cytoskeleton;
cell division cluster containing FtsQ,locus|B878_01639,
,NA,NA,NA,gi|444242101,murD,ko:K01925,UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9),Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo,locus|B878_01644,
,NA,NA,NA,gi|444242104,murE,ko:K01928,"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)",Peptidoglycan Biosynthesis;
Peptidoglycan biosynthesis--gjo,locus|B878_01659,
,NA,NA,NA,gi|444242112,diaA,ko:K12961,Phosphoheptose isomerase (EC 5.3.1.-),CBSS-160492.1.peg.550;
Capsular heptose biosynthesis;
LOS core oligosaccharide biosynthesis,locus|B878_01699,
,NA,NA,NA,gi|444242145,plsY,ko:K08591,Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY,Glycerolipid and Glycerophospholipid Metabolism in Bacteria,locus|B878_01884,
,NA,NA,NA,gi|444242150,dnaG,ko:K02316,DNA primase (EC 2.7.7.-),DNA-replication;
Macromolecular synthesis operon,locus|B878_01909,
,NA,NA,NA,gi|444242240,mpl,ko:K02558,UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-),Peptidoglycan biosynthesis--gjo;
Recycling of Peptidoglycan Amino Acids,locus|B878_01274,
,NA,NA,NA,gi|444242241,ubiX,ko:K03186,3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-),Ubiquinone Biosynthesis;
Ubiquinone biosynthesis -- gjo,locus|B878_01279,
,NA,NA,NA,gi|444242312,NA,NA,hypothetical protein,- none -,locus|B878_00150,
,NA,NA,NA,gi|444242314,NA,NA,Octaprenyl diphosphate synthase (EC 2.5.1.90),Isoprenoinds for Quinones;
Polyprenyl Diphosphate Biosynthesis;
Proteorhodopsin,locus|B878_00160,
,NA,NA,NA,gi|444242326,NA,ko:K16171,Fumarylacetoacetase (EC 3.7.1.2),Homogentisate pathway of aromatic compound degradation;
Salicylate and gentisate catabolism,locus|B878_00220,
,NA,NA,NA,gi|444242345,NA,NA,hypothetical protein,- none -,locus|B878_00315,
,NA,NA,NA,gi|444242365,VP1463,NA,Glycosyltransferase SypN,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00415,
,NA,NA,NA,gi|444242372,NA,NA,Signal transduction histidine kinase SypF,Symbiotic colonization and sigma-dependent biofilm formation gene cluster,locus|B878_00450,
,NA,NA,NA,gi|444242399,NA,ko:K03750,Molybdopterin-guanine dinucleotide biosynthesis protein MobB / Molybdopterin biosynthesis protein MoeA,Molybdenum cofactor biosynthesis;
Molybdenum cofactor biosynthesis,locus|B878_00585,
,NA,NA,NA,gi|444242403,NA,NA,Sigma-54 dependent response regulator,- none -,locus|B878_00615,
,NA,NA,NA,gi|444242404,NA,ko:K02482,Signal transduction histidine kinase,- none -,locus|B878_00620,
,NA,NA,NA,gi|444242406,NA,NA,Cdc6-related protein,- none -,locus|B878_00630,
,NA,NA,NA,gi|444242410,NA,NA,Formate dehydrogenase associated protein,- none -,locus|B878_00650,
,NA,NA,NA,gi|444242422,NA,ko:K11069,"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)",Polyamine Metabolism,locus|B878_00710,
,NA,NA,NA,gi|444242423,potC,ko:K11070,Spermidine/putrescine import ABC transporter permease protein PotC (TC 3.A.1.11.1),Polyamine Metabolism,locus|B878_00715,
,NA,NA,NA,gi|444242425,potA,ko:K11072,Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1),Polyamine Metabolism,locus|B878_00725,
,NA,NA,NA,gi|444242447,NA,ko:K04770,Putative protease La homolog (EC 3.4.21.-),- none -,locus|B878_00850,