Pervasive duplication of tumor suppressors in afrotherians during the evolution of large bodies and reduced cancer risk
Description
Data availability
All data generated or analysed during this study are included in the manuscript and supporting files.
The following previously published data sets were used:
Di Palma FAlfoldi JJohnson JBerlin AGnerre SJaffe DMacCallum IYoung SWalker BJLindblad-Toh K (2013) NCBI Assembly ID ChrAsi1.0. Chrysochloris asiatica (Cape golden mole) genome. https://www.ncbi.nlm.nih.gov/assembly/GCF_000296735.1/
Gnerre S Heiman D Young S Fulton L Delehaunty K Minx P Chinwalla A Mardis E Wilson R Warren W (2018) NCBI Assembly ID C_hoffmanni-2.0.1_HiC. The Genome Sequence of Choloepus hoffmanni (sloth). https://www.dnazoo.org/assemblies/Choloepus_hoffmanni
Lindblad-Toh KChang JL Gnerre S Clamp M Lander ES (2012) NCBI Assembly ID Dasnov3.0. Dasypus novemcinctus (nine-banded armadillo) genome. https://www.ncbi.nlm.nih.gov/assembly/GCA_000208655.2/
Di Palma F Alfoldi J Johnson J Berlin A Gnerre S Jaffe D MacCallum I Young S Walker BJ Lindblad-Toh K (2013) NCBI Assembly ID EchTel2.0. Echinops telfairi (small Madagascar hedgehog). https://www.ncbi.nlm.nih.gov/assembly/GCA_000313985.1/
Di Palma F Alfoldi J Johnson J Berlin A Gnerre S Jaffe D MacCallum I Young S Walker BJ Lindblad-Toh K (2013) NCBI Assembly ID EleEdw1.0. Elephantulus edwardii (Cape elephant shrew). https://www.ncbi.nlm.nih.gov/assembly/GCA_000299155.1/
Palkopoulou E Lipson M Mallick S Nielsen S Rohland N Baleka S Karpinski E Ivancevic AM To TH Kortschak RD Raison JM Qu Z Chin TJ Alt KW Claesson S Dalén L MacPhee RDE Meller H Roca AL Ryder OA Heiman D Young S Breen M Williams C Aken BL Ruffier M Karlsson E Johnson J Di Palma F Alfoldi J Adelson DL Mailund T Munch K Lindblad-Toh K Hofreiter M Poinar H Reich D (2018) NCBI Assembly ID PRJEB24361. A comprehensive genomic history of extinct and living elephants. https://www.ebi.ac.uk/ena/browser/view/PRJEB24361
Di Palma F Alfoldi J Johnson J Berlin A Gnerre SJ affe D MacCallum I Young S Walker BJ Lindblad-Toh K (2017) NCBI Assembly ID oryAfe2. Aardvark (Orycteropus afer) genome. https://www.dnazoo.org/assemblies/Orycteropus_afer
Di Palma F Alfoldi J Johnson J Berlin A Gnerre S Jaffe D MacCallum I Young S Walker BJ Lindblad-Toh K (2013) NCBI Assembly ID proCap-Pcap_2.0_HiC. A comprehensive genomic history of extinct and living elephants. https://www.dnazoo.org/assemblies/Procavia_capensis
Andrew DF Liu Y Thomas GWC Vinar T Alfoldi J Deng J Dugan S (2015) NCBI Assembly ID triManLat2. West Indian manatee (Trichechus manatus) genome. https://www.dnazoo.org/assemblies/Trichechus_manatus
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Additional details
Identifiers
- DOI
- 10.7554/eLife.65041
- Other
- oai:uchicago.tind.io:10000
Funding
- University of Chicago