Partial connectomes of labeled dopaminergic circuits reveal non-synaptic communication and axonal remodeling after exposure to cocaine
Creators
- 1. University of Chicago
Description
Data availability
Homemade code used for EM image processing (i.e., 2D stitching, 3D alignments, brightness/contrast normalization) can be freely accessed here: https://github.com/Hanyu-Li/klab_utils. 3D alignment was performed using the publicly available Aligntk software available here: https://mmbios.pitt.edu/aligntk-home. Homemade code used for data anlaysis of Knossos traced skeletons (i.e., xml files) can be freely accessed here: https://github.com/knorwood0/MNRVA (copy archived at swh:1:rev:dc5512ff7c7ce6d5cd1de5bd7a8678193cdcf750). All EM data is are freely available online and can be accessed here: https://bossdb.org/project/wildenberg2021. Datasets are from the following brain regions and contains the in-plane imaging resolution listed in the filename.
The following data sets were generated:
Wildenberg G Sorokina A Koranda J Monical A Heer C Sheffield M Zhuang X McGehee D Kasthuri B (2021) BossDB ID wildenberg2021. Combined genetic labeling and connectomics of dopamine axons to reveal wiring properties and rewiring affects caused by cocaine. https://bossdb.org/project/wildenberg2021
Files
elife-71981-v1.pdf
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Additional details
Identifiers
- DOI
- 10.7554/eLife.71981
- Other
- oai:uchicago.tind.io:9893
Related works
- Cites
- https://doi.org/10.1101/2020.09.29.318881 (URL)
Funding
- McKnight Foundation
- National Institutes of Health
- U01 MH109100
- National Science Foundation