Published May 27, 2020 | Version v1
Journal article Open

The architecture of EMC reveals a path for membrane protein insertion

Description

Approximately 25% of eukaryotic genes code for integral membrane proteins that are assembled at the endoplasmic reticulum. An abundant and widely conserved multi-protein complex termed EMC has been implicated in membrane protein biogenesis, but its mechanism of action is poorly understood. Here, we define the composition and architecture of human EMC using biochemical assays, crystallography of individual subunits, site-specific photocrosslinking, and cryo-EM reconstruction. Our results suggest that EMC's cytosolic domain contains a large, moderately hydrophobic vestibule that can bind a substrate's transmembrane domain (TMD). The cytosolic vestibule leads into a lumenally-sealed, lipid-exposed intramembrane groove large enough to accommodate a single substrate TMD. A gap between the cytosolic vestibule and intramembrane groove provides a potential path for substrate egress from EMC. These findings suggest how EMC facilitates energy-independent membrane insertion of TMDs, explain why only short lumenal domains are translocated by EMC, and constrain models of EMC's proposed chaperone function.

Data availability

Structural coordinates have been deposited in PDB under accession codes 6Y4L and 6Z3W. Cryo-EM data had been deposited to EMDB under accession code EMD-11058. All other data in this study are provided within the manuscript.

The following data sets were generated:

O'Donnell JP Wagner A Phillips BP Hegde RS (2020) RCSB Protein Data Bank ID 6Y4L. Crystal structure of the human EMC2•EMC9 complex. https://www.rcsb.org/structure/6Y4L

O'Donnell JP Phillips BP Hegde RS (2020) RCSB Protein Data Bank ID 6Z3W. Cryo-EM structure of human EMC. https://www.rcsb.org/structure/6Z3W

Hegde RS Phillips BP O'Donnell JP Miller EA (2020) Electron Microscopy Data Bank ID 11058. Human ER Membrane protein Complex (EMC). https://www.ebi.ac.uk/pdbe/emdb/11058

The following previously published data sets were used:

Voorhees RM Hegde RS (2016) RCSB Protein Data Bank ID 3JC2. The structure of the mammalian Sec61 channel opened by a signal sequence. https://www.rcsb.org/structure/3JC2

Voorhees RM Fernandez IS Scheres SH WHegde RS (2014) RCSB Protein Data Bank ID 3J7Q. Structure of the idle mammalian ribosome-Sec61 complex. https://www.rcsb.org/structure/3J7Q

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Additional details

Identifiers

DOI
10.7554/eLife.57887
Other
oai:uchicago.tind.io:9863

Funding

Medical Research Council
MC_UP_A022_1007
Medical Research Council
MC_UP_1201/10
National Institutes of Health
R01 GM078186
National Institutes of Health
R01 GM130051
European Molecular Biology Organization
ALTF 18-2018
Boehringer Ingelheim Fonds
Naito Foundation
Japanese Biochemical Society
Swiss National Science Foundation
P2ELP3_18910

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Biochemistry and Molecular Biology