Published February 27, 2023
| Version v1
Journal article
Open
Noncanonical electromechanical coupling paths in cardiac hERG potassium channel
Creators
- 1. University of Chicago
- 2. Sapienza Università di Roma
Description
Voltage-gated potassium channels are involved in many physiological processes such as nerve impulse transmission, the heartbeat, and muscle contraction. However, for many of them the molecular determinants of the gating mechanism remain elusive. Here, using a combination of theoretical and experimental approaches, we address this problem focusing on the cardiac hERG potassium channel. Network analysis of molecular dynamics trajectories reveals the presence of a kinematic chain of residues that couples the voltage sensor domain to the pore domain and involves the S4/S1 and S1/S5 subunit interfaces. Mutagenesis experiments confirm the role of these residues and interfaces in the activation and inactivation mechanisms. Our findings demonstrate the presence of an electromechanical transduction path crucial for the non-domain-swapped hERG channel gating that resembles the noncanonical path identified in domain-swapped K+ channels.
Data availability
The data that support this study are available from the corresponding authors upon request. The MD trajectories that support the findings of this study are available in Zenodo with the identifiers: [https://doi.org/10.5281/zenodo.7100860], [https://doi.org/10.5281/zenodo.7371824] and [https://doi.org/10.5281/zenodo.7372042]. The contact maps are available in Zenodo with the identifier: [https://doi.org/10.5281/zenodo.7470218]. Accession codes of the structures used to produce the open and closed states, respectively: hERG open state PDB ID 5VA2 and EAG1 closed state PDB ID 5K7L. Accession codes used for the sequence alignment: hERG UniProt ID Q12809 and Shaker UniProt ID P08510. The data underling Figs. 2–5 are provided as Source Data File. Source data are provided with this paper.Files
Noncanonical-electromechanical-coupling-paths-in-cardiac-hERG-potassium-channel.pdf
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Additional details
Identifiers
- DOI
- 10.1038/s41467-023-36730-7
- Other
- oai:uchicago.tind.io:5585
Funding
- European Research Council
- European Union’s Horizon 2020 research and innovation programme
- National Institutes of Health
- R01GM030376