Published March 8, 2021 | Version v1
Journal article Open

Optimal prediction with resource constraints using the information bottleneck

  • 1. University of Chicago
  • 2. Sorbonne University

Description

Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories.

Data availability

These are theoretical results that can be numerically calculated, without data to share.

Files

journal.pcbi.1008743.pdf

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Additional details

Identifiers

DOI
10.1371/journal.pcbi.1008743
Other
oai:uchicago.tind.io:5955

Funding

U.S. National Science Foundation
Center for the Physics of Biological Function
U.S. National Science Foundation
CAREER award
National Institutes of Health
BRAIN initiative
France Chicago Center
FACCTS
Centre National de la Recherche Scientifique
European Research Council
Consolidator Grant

UChicago Information

Division(s)
Biological Sciences Division, Physical Sciences Division
Department(s)
Biophysical Sciences, Organismal Biology and Anatomy, Physics