Published August 21, 2024 | Version v1
Journal article Open

Clinical and molecular correlates of tumor aneuploidy in metastatic non-small cell lung cancer

  • 1. University of Chicago

Description

Recent studies have linked elevated tumor aneuploidy to anti-tumor immune suppression and adverse survival following immunotherapy. Herein, we provide supportive evidence for tumor aneuploidy as a biomarker of response to immunotherapy in patients with non-small cell lung cancer (NSCLC). We identify a dose–response relationship between aneuploidy score and patient outcomes. In two independent NSCLC cohorts (n = 659 patients), we demonstrate a novel association between elevated aneuploidy and non-smoking-associated oncogenic driver mutations. Lastly, we report enrichment of TERT amplification and immune-suppressive phenotypes of highly aneuploid NSCLC. Taken together, our findings emphasize a potentially critical role for tumor aneuploidy in guiding immunotherapy treatment strategies.

Data availability

All original data for the SU2C-MARK Foundation cohort are available from the original manuscript's Zenodo repository: https://zenodo.org/records/7849582. All data for the MSK-IMPACT cohort is deposited at the following cBioPortal repository: https://www.cbioportal.org/study/summary?id=tmb_mskcc_2018 and AACR Project GENIE: https://www.synapse.org/#!Synapse:syn7222066/wiki/405659. All modified and/or newly generated data are available at this manuscript's associated Zenodo repository: https://zenodo.org/records/11671610.

All proprietary code necessary to replicate the results and figures in this manuscript are available at this manuscript's associated Zenodo repository: https://zenodo.org/records/11671610.

Files

Clinical-and-molecular-correlates-of-tumor-aneuploidy-in-metastatic-non-small-cell-lung-cancer.pdf

Additional details

Identifiers

DOI
10.1038/s41598-024-66062-5
Other
oai:uchicago.tind.io:13263

Funding

Ludwig Cancer Research Foundation
LUNGevity Foundation
Career Development Award
University of Chicago Medicine Comprehensive Cancer Center
Ullman Scholarship in Translational Cancer Immunology
University of Chicago Medicine Comprehensive Cancer Center
Cancer Spotlight Grant
American Lung Association
Lung Cancer Discovery Award
Falk Medical Research Trust
Catalyst Award
University of Chicago
John D. Arnold, MD Scientific Research Prize

UChicago Information

Division(s)
Biological Sciences Division, Pritzker School of Medicine
Department(s)
Radiation and Cellular Oncology
Center(s) or Institute(s)
Ludwig Center for Metastasis Research