Published April 16, 2019 | Version v1
Journal article Open

Quantification of microenvironmental metabolites in murine cancers reveals determinants of tumor nutrient availability

Description

Cancer cell metabolism is heavily influenced by microenvironmental factors, including nutrient availability. Therefore, knowledge of microenvironmental nutrient levels is essential to understand tumor metabolism. To measure the extracellular nutrient levels available to tumors, we utilized quantitative metabolomics methods to measure the absolute concentrations of >118 metabolites in plasma and tumor interstitial fluid, the extracellular fluid that perfuses tumors. Comparison of nutrient levels in tumor interstitial fluid and plasma revealed that the nutrients available to tumors differ from those present in circulation. Further, by comparing interstitial fluid nutrient levels between autochthonous and transplant models of murine pancreatic and lung adenocarcinoma, we found that tumor type, anatomical location and animal diet affect local nutrient availability. These data provide a comprehensive characterization of the nutrients present in the tumor microenvironment of widely used models of lung and pancreatic cancer and identify factors that influence metabolite levels in tumors.

Data availability

Source data files detailing the concentrations of each metabolite in each sample are included for all figures. We have also deposited this information and the raw mass spectra in Metabolomics Workbench (http://www.metabolomicsworkbench.org/) as project ID: PR000750.

The following data sets were generated:

Muir A (2019) Metabolomics Workbench Quantification of microenvironmental metabolites in murine cancers reveals determinants of tumor nutrient availability. https://doi.org/10.21228/M8QX2G

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Additional details

Identifiers

DOI
10.7554/eLife.44235
Other
oai:uchicago.tind.io:9869

Funding

Koch Institute for Integrative Cancer Research
Koch Institute Graduate Fellowship
National Cancer Institute
F32CA210421
Ludwig Institute for Cancer Research
Lustgarten Foundation
Howard Hughes Medical Institute
Stand Up To Cancer
National Cancer Institute
R01CA168653
National Cancer Institute
R01CA201276
National Cancer Institute
P30CA1405141
National Cancer Institute
F32CA213810

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Ben May Department for Cancer Research