Published March 22, 2019 | Version v1
Journal article Open

Electronic structure at coarse-grained resolutions from supervised machine learning

  • 1. University of Chicago
  • 2. Argonne National Laboratory

Description

Computational studies aimed at understanding conformationally dependent electronic structure in soft materials require a combination of classical and quantum-mechanical simulations, for which the sampling of conformational space can be particularly demanding. Coarse-grained (CG) models provide a means of accessing relevant time scales, but CG configurations must be back-mapped into atomistic representations to perform quantum-chemical calculations, which is computationally intensive and inconsistent with the spatial resolution of the CG models. A machine learning approach, denoted as artificial neural network electronic coarse graining (ANN-ECG), is presented here in which the conformationally dependent electronic structure of a molecule is mapped directly to CG pseudo-atom configurations. By averaging over decimated degrees of freedom, ANN-ECG accelerates simulations by eliminating backmapping and repeated quantum-chemical calculations. The approach is accurate, consistent with the CG spatial resolution, and can be used to identify computationally optimal CG resolutions.

Data availability

All scripts for generating data are provided in the SM, but that actual datasets (100's of thousands of data points are not included in the SM). However, we are happy to provide these to anyone upon request. Example scripts used to generate MD configurations, electronic structure, and ANN fits are provided in the Supplementary Materials. Additional data related to this paper may be requested from the authors.

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Additional details

Identifiers

DOI
10.1126/sciadv.aav1190
Other
oai:uchicago.tind.io:10971

Funding

U.S. Department of Energy
Midwest Integrated Center for Computational Materials
Argonne National Laboratory
Maria Goeppert Mayer Named Fellowship

UChicago Information

Division(s)
Pritzker School of Molecular Engineering