Published March 22, 2019
| Version v1
Journal article
Open
Electronic structure at coarse-grained resolutions from supervised machine learning
Creators
- 1. University of Chicago
- 2. Argonne National Laboratory
Description
Computational studies aimed at understanding conformationally dependent electronic structure in soft materials require a combination of classical and quantum-mechanical simulations, for which the sampling of conformational space can be particularly demanding. Coarse-grained (CG) models provide a means of accessing relevant time scales, but CG configurations must be back-mapped into atomistic representations to perform quantum-chemical calculations, which is computationally intensive and inconsistent with the spatial resolution of the CG models. A machine learning approach, denoted as artificial neural network electronic coarse graining (ANN-ECG), is presented here in which the conformationally dependent electronic structure of a molecule is mapped directly to CG pseudo-atom configurations. By averaging over decimated degrees of freedom, ANN-ECG accelerates simulations by eliminating backmapping and repeated quantum-chemical calculations. The approach is accurate, consistent with the CG spatial resolution, and can be used to identify computationally optimal CG resolutions.
Data availability
All scripts for generating data are provided in the SM, but that actual datasets (100's of thousands of data points are not included in the SM). However, we are happy to provide these to anyone upon request. Example scripts used to generate MD configurations, electronic structure, and ANN fits are provided in the Supplementary Materials. Additional data related to this paper may be requested from the authors.Files
sciadv.aav1190.pdf
Files
(3.8 MB)
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Additional details
Identifiers
- DOI
- 10.1126/sciadv.aav1190
- Other
- oai:uchicago.tind.io:10971
Funding
- U.S. Department of Energy
- Midwest Integrated Center for Computational Materials
- Argonne National Laboratory
- Maria Goeppert Mayer Named Fellowship