Published February 4, 2022 | Version v1
Journal article Open

Classical mathematical models for prediction of response to chemotherapy and immunotherapy

  • 1. RWTH Aachen University
  • 2. Polish Academy of Sciences
  • 3. Delft University of Technology
  • 4. University of Chicago
  • 5. Lee Moffitt Cancer Center & Research Institute

Description

Classical mathematical models of tumor growth have shaped our understanding of cancer and have broad practical implications for treatment scheduling and dosage. However, even the simplest textbook models have been barely validated in real world-data of human patients. In this study, we fitted a range of differential equation models to tumor volume measurements of patients undergoing chemotherapy or cancer immunotherapy for solid tumors. We used a large dataset of 1472 patients with three or more measurements per target lesion, of which 652 patients had six or more data points. We show that the early treatment response shows only moderate correlation with the final treatment response, demonstrating the need for nuanced models. We then perform a head-to-head comparison of six classical models which are widely used in the field: the Exponential, Logistic, Classic Bertalanffy, General Bertalanffy, Classic Gompertz and General Gompertz model. Several models provide a good fit to tumor volume measurements, with the Gompertz model providing the best balance between goodness of fit and number of parameters. Similarly, when fitting to early treatment data, the general Bertalanffy and Gompertz models yield the lowest mean absolute error to forecasted data, indicating that these models could potentially be effective at predicting treatment outcome. In summary, we provide a quantitative benchmark for classical textbook models and state-of-the art models of human tumor growth. We publicly release an anonymized version of our original data, providing the first benchmark set of human tumor growth data for evaluation of mathematical models.

Data availability

All experiments were conducted in accordance with the Declaration of Helsinki and the International Ethical Guidelines for Biomedical Research Involving Human Subjects by the Council for International Organizations of Medical Sciences (CIOMS). This study complies with the “Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis” (TRIPOD) statement [32]. All data were obtained in an anonymized way through a proposal to F. Hoffmann-La Roche Ltd. Through the platform “Clinical Study Data Request” (CSDR, www.ClinicalStudyDataRequest.com), which is now inactive and has been replaced by the Vivli platform (https://vivli.org, April 2021). Qualified researchers may request access to individual patient level data through the clinical study data request platform (https://vivli.org/). Further details on Roche’s criteria for eligible studies are available here (https://vivli.org/members/ourmembers/). For further details on Roche’s Global Policy on the Sharing of Clinical Information and how to request access to related clinical study documents, see (https://www.roche.com/research_and_development/who_we_are_how_we_work/clinical_trials/our_commitment_to_data_sharing.htm). The original proposal submitted to the CSDR platform is available in S1 Text. In order to enable reproduction of our experiments, we publicly release a fully anonymized subset of the data containing only the tumor volume measurements for the target lesion and the respective study and treatment arm (S1 Data).

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Additional details

Identifiers

DOI
10.1371/journal.pcbi.1009822
Other
oai:uchicago.tind.io:6314

Funding

Deutsche Forschungsgemeinschaft
SFB CRC1382
Deutsche Forschungsgemeinschaft
SFB-TRR57
Federal Ministry of Health
ZMVI1-2520DAT111
German Cancer Aid
70113864

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Medicine