Published December 9, 2020 | Version v1
Journal article Open

Free energy calculations of the functional selectivity of 5-HT2B G protein-coupled receptor

  • 1. University of Chicago
  • 2. Zoetis Inc

Description

G Protein-Coupled Receptors (GPCRs) mediate intracellular signaling in response to extracellular ligand binding and are the target of one-third of approved drugs. Ligand binding modulates the GPCR molecular free energy landscape by preferentially stabilizing active or inactive conformations that dictate intracellular protein recruitment and downstream signaling. We perform enhanced sampling molecular dynamics simulations to recover the free energy surfaces of a thermostable mutant of the GPCR serotonin receptor 5-HT2B in the unliganded form and bound to a lysergic acid diethylamide (LSD) agonist and lisuride antagonist. LSD binding imparts a ∼110 kJ/mol driving force for conformational rearrangement into an active state. The lisuride-bound form is structurally similar to the apo form and only ∼24 kJ/mol more stable. This work quantifies ligand-induced conformational specificity and functional selectivity of 5-HT2B and presents a platform for high-throughput virtual screening of ligands and rational engineering of the ligand-bound molecular free energy landscape.

Data availability

The Data Availability Statement can be updated to: “All relevant data are within the manuscript, its Supporting information files, or hosted in the PLUMED-NEST (https://www.plumed-nest.org/eggs/20/026) and GPCRmd (https://submission.gpcrmd.org/view/213/https://submission.gpcrmd.org/view/214/https://submission.gpcrmd.org/view/217/) repositories.

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Additional details

Identifiers

DOI
10.1371/journal.pone.0243313
Other
oai:uchicago.tind.io:6206

Funding

Zoetis Inc.
External Innovation Department
National Science Foundation
DMR-1828629

UChicago Information

Division(s)
Pritzker School of Molecular Engineering